Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   RDV54_RS00635 Genome accession   NZ_CP133471
Coordinates   101084..103099 (+) Length   671 a.a.
NCBI ID   WP_001048781.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96084..108099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS00615 (RDV54_00615) - 97501..98532 (+) 1032 WP_000232190.1 3-deoxy-7-phosphoheptulonate synthase -
  RDV54_RS00620 (RDV54_00620) - 98534..99565 (+) 1032 WP_000864047.1 3-deoxy-7-phosphoheptulonate synthase -
  RDV54_RS00625 (RDV54_00625) acpS 99610..99972 (+) 363 WP_000635006.1 holo-ACP synthase -
  RDV54_RS00630 (RDV54_00630) alr 99962..101065 (+) 1104 WP_000648064.1 alanine racemase -
  RDV54_RS00635 (RDV54_00635) recG/mmsA 101084..103099 (+) 2016 WP_001048781.1 ATP-dependent DNA helicase RecG Machinery gene
  RDV54_RS00640 (RDV54_00640) - 103523..104503 (+) 981 WP_000795106.1 acetylxylan esterase -
  RDV54_RS00645 (RDV54_00645) - 104704..105402 (+) 699 WP_001135678.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  RDV54_RS00650 (RDV54_00650) - 105421..106938 (+) 1518 WP_000477437.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75231.69 Da        Isoelectric Point: 5.7007

>NTDB_id=799403 RDV54_RS00635 WP_001048781.1 101084..103099(+) (recG/mmsA) [Streptococcus mitis strain LMG 14557]
MNLHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVLELEDGEKAVLSGQVVTPASVQYYGFKRNRLR
FSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGKWDRAKASLTGMKVLAQVEDDLQPVYRLTQGISQASLVKVIKTAFD
QGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKDLGEYKQALRRIKFEELFYFQMQLQTLKSENRVQGSGLVLDWSQE
KVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQSALMVPTEILAEQHFES
LKSLFPDLKLALLTGSLKAAEKREVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPLIEESEALDLKN
AIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK
VASYISSIEGWQEDPEWRMIALHLEKKEHLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=799403 RDV54_RS00635 WP_001048781.1 101084..103099(+) (recG/mmsA) [Streptococcus mitis strain LMG 14557]
ATGAATCTACATCAACCCTTGCATGTCTTACCTGGTGTGGGACCAAAGTCAGCAGAAAAATACGCCAAACTAGGAATTGA
AAACTTGCAAGACCTCTTGCTCTACTTTCCTTTCCGTTACGAAGACTTTAAAACCAAGCAGGTGCTGGAGCTGGAAGACG
GAGAAAAGGCGGTTTTGTCTGGTCAAGTCGTGACTCCTGCTAGTGTTCAGTATTATGGTTTCAAGCGCAATCGACTGCGT
TTTAGTCTCAAGCAGGGAGAAGTTGTTTTTGCGGTGAATTTCTTTAACCAGCCCTATCTGGCTGATAAGATAGAGTTGGG
AGCAACTCTTGCCGTCTTTGGAAAATGGGACCGTGCCAAGGCTAGTCTGACTGGGATGAAGGTCCTGGCTCAGGTGGAAG
ATGACCTCCAGCCTGTCTATCGTCTGACTCAGGGAATCAGTCAAGCCAGTCTGGTCAAGGTCATCAAAACGGCCTTTGAT
CAGGGCCTGGACCTCTTGATAGAGGAAAATCTGCCCCAGTCCTTGCTGGACAAATACAAACTCATGTCCCGTTGTCAGGC
AGTCCGAGCTATGCATTTTCCAAAGGATTTGGGAGAATACAAGCAGGCCCTTCGCCGTATCAAGTTTGAGGAACTCTTTT
ATTTCCAAATGCAATTGCAAACGCTCAAATCTGAAAATAGAGTTCAGGGAAGCGGTCTGGTTCTGGACTGGTCTCAGGAA
AAAGTGTCAGCTGTTAAAGAAAGTCTGCCATTTGCCCTGACCCAAGCTCAGGAAAAGAGTTTGCAGGAAATTTTAACTGA
TATGAAGTCCGACCACCACATGAATCGTCTCCTACAAGGGGATGTGGGGAGTGGGAAAACAGTAGTCGCTGGTTTGGCCA
TGTTTGCGGCGGTGACAGCTGGCTACCAATCAGCCCTCATGGTGCCAACAGAAATCTTAGCAGAGCAACACTTTGAGAGT
TTGAAGAGTCTCTTCCCAGACTTGAAACTGGCTCTCTTAACAGGTTCCTTAAAAGCTGCAGAAAAAAGAGAAGTCTTGGA
GACCATTGCCAAGGGTGAGGCCGACTTTATTATCGGAACTCATGCTTTGATACAAGATGGAGTGGATTATGCTCGTCTTG
GCTTGATTATCATCGATGAGCAGCACCGTTTTGGTGTGGGGCAAAGGCGTATTTTACGGGAAAAAGGGGACAATCCTGAC
GTTCTCATGATGACGGCAACTCCTATTCCACGGACGCTGGCTATCACAGCCTTTGGCGATATGGATGTTTCCATTATCGA
CCAGATGCCAGCAGGGAGGAAGCCTATTGTGACGCGCTGGATCAAACATGAGCAACTACCTCAGGTCTTGACTTGGTTAG
AGGGAGAAATCCAAAAAGGTTCTCAAGCCTATGTTATCTCTCCCTTGATTGAAGAATCAGAAGCTCTGGATTTGAAAAAT
GCCATTGCCTTATCTGAGGAGTTGACGGCTCATTTTGCAGGTAAGGCAGAAGTGGCTCTTCTACATGGTAAGATGAAGAG
TGACGAAAAAGATCAGATTATGCAGGAGTTCAAAGAGCAAAAAACGGATATTCTAGTTTCGACAACGGTTATCGAGGTCG
GGGTTAATGTTCCAAATGCGACCGTCATGATTATCATGGATGCCGATCGCTTCGGGCTCAGCCAGCTTCACCAGCTCAGA
GGTCGTGTTGGTCGGGGAGATAAGCAGTCCTATGCAGTTCTTGTTGCCAATCCCAAGACGGATTCTGGGAAAGACCGTAT
GCGCATCATGACAGAAACCACCAATGGTTTTGTTCTTGCTGAGGAAGATTTGAAAATGCGTGGTTCAGGTGAGATTTTTG
GAACTAGACAGTCAGGTCTTCCAGAATTCCAAGTGGCTGATATTATCGAAGATTTCCCAATTTTAGAAGAAGCCAGAAAA
GTTGCTAGCTACATTAGTTCAATAGAAGGCTGGCAAGAGGATCCGGAATGGCGCATGATTGCCCTTCATTTGGAAAAGAA
AGAACATCTAGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(11-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-665)

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

97.466

100

0.975
  recG/mmsA Streptococcus pneumoniae R36A

97.466

100

0.975
  recG Bacillus subtilis subsp. subtilis str. 168

49.41

100

0.499
  recG Neisseria meningitidis strain C311

38.724

100

0.389