Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RDV53_RS09905 Genome accession   NZ_CP133470
Coordinates   2055759..2057795 (-) Length   678 a.a.
NCBI ID   WP_005696282.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050759..2062795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS09890 (RDV53_09890) - 2051782..2052699 (-) 918 WP_172461370.1 lysine exporter LysO family protein -
  RDV53_RS09895 (RDV53_09895) aroG 2052823..2053914 (-) 1092 WP_005696279.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  RDV53_RS09900 (RDV53_09900) - 2054329..2055720 (+) 1392 WP_005696281.1 DegQ family serine endoprotease -
  RDV53_RS09905 (RDV53_09905) uvrB 2055759..2057795 (-) 2037 WP_005696282.1 excinuclease ABC subunit UvrB Machinery gene
  RDV53_RS09915 (RDV53_09915) - 2058404..2059177 (-) 774 WP_005696285.1 TIGR01619 family protein -
  RDV53_RS09920 (RDV53_09920) xthA 2059187..2059990 (-) 804 WP_005696286.1 exodeoxyribonuclease III -
  RDV53_RS09925 (RDV53_09925) - 2060223..2061533 (+) 1311 WP_005696287.1 sodium:proton antiporter -
  RDV53_RS09930 (RDV53_09930) - 2061544..2062221 (-) 678 WP_005696288.1 TIGR01621 family pseudouridine synthase -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 77383.00 Da        Isoelectric Point: 5.0957

>NTDB_id=799400 RDV53_RS09905 WP_005696282.1 2055759..2057795(-) (uvrB) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MAEKINTKPFILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDRAIRIELFDDEIERLSLFDPLTGTSF
GAVPRFTVYPKTHYVTPRERILDAIEKIKAELVQRREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGTEIVDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLDIGQGANQKAKSKQRGKTAAEPTALYNAPKSAKEFQQQ
IKKLEQQMYKFAQDLEFEKAAAVRDKLHQLREQFMISE

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=799400 RDV53_RS09905 WP_005696282.1 2055759..2057795(-) (uvrB) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGGCAGAGAAAATTAACACGAAGCCTTTTATCCTTCATTCCGATTTTAAACCGTCCGGTGATCAGCCCCAAGCAATCGA
AAAATTAGTCGAAAATTTAGAGGATGGTTTGGCGCATCAAACCCTTCTCGGGGTAACGGGCTCTGGTAAAACCTTTACTA
TTGCAAATGTTATCGCGACGTTAAATCGCCCAGCAATGTTACTTGCCCCAAATAAAACCCTTGCTGCTCAGCTTTATGCA
GAAATGAAAGCATTCTTTCCTGAAAACGCGGTGGAGTATTTCGTCTCATACTATGATTACTATCAGCCGGAAGCTTATGT
ACCGAGTAGTGATACCTTTATTGAGAAAGATGCTTCTATTAATGATCAGATTGAACAGATGCGTCTTTCAGCTACGAAGT
CATTTTTGGAGCGTCGAGATACTATCGTAGTCGCATCTGTTTCAGCGATTTATGGTTTGGGGGACCCAGATAGCTATTTA
CAAATGATGTTGCATTTACAGCAAGGTGCAATTATCAATCAACGTCAGATTTTAGCGAAGTTGGCGGAATTACAATACAC
AAGAAACGATCAAGCCTTTCAGCGTGGTACATTCCGTGTGCGCGGCGAAGTGATTGATATTTTCCCTGCGGAATCGGACG
ATCGTGCGATACGAATTGAATTATTTGATGATGAAATTGAACGTTTAAGTTTATTTGATCCTTTAACGGGCACAAGTTTT
GGTGCTGTTCCTCGTTTTACGGTATATCCGAAAACGCACTATGTGACACCGAGAGAACGTATTTTAGATGCTATTGAAAA
AATCAAAGCGGAACTTGTGCAACGCCGTGAGTATTTCATCAAAGAGCATAAATTGTTGGAAGAGCAGCGCATTACCCAAC
GCACGCAGTTTGATATTGAGATGATGAACGAGCTCGGTTATTGCTCAGGCATCGAAAACTATTCACGCTATCTTTCTGGC
CGAAATGAAGGCGAACCGCCTCCGACATTATTTGATTATATGCCGTCTGATGCGATTTTGATTATTGATGAATCACACGT
GACAGTACCACAAATTGGTGGGATGTATCGTGGAGACCGCTCACGTAAAGAAACTTTGGTGGAATATGGTTTCCGTTTGC
CTTCTGCATTAGATAACCGTCCATTGCGTTTTGAAGAGTTTGAACGTTTAGCGCCACAGACGATTTACGTTTCAGCGACA
CCTGGTCCTTATGAATTGGAAAAATCGGGTACTGAAATTGTCGATCAGGTTGTGCGTCCAACAGGCTTACTCGATCCGCA
AATTGAAATTCGTCCAGTGTCCATTCAAGTGGATGATTTGCTGTCTGAAGCACGTCAAAGAGCGGACAAAAATGAGCGTG
TTTTAGTGACAACGCTGACGAAGAAAATGGCGGAAGATTTAACGGATTACCTAGACGAGCACGGTATTCGTGTCCGTTAT
TTGCATTCAGATATTGATACTGTTGAGCGTGTAGAGATTATTCGTGATTTACGTTTAGGCGAGTTTGATGTATTGGTTGG
TATCAACTTGTTACGTGAGGGCTTGGATATTCCAGAAGTCTCTCTTGTGGCAATTTTAGATGCGGATAAAGAAGGTTTCT
TGCGTTCTGAACGTTCCTTAATCCAAACTATCGGCCGTGCTGCTCGAAACTTAAATGGTAAAGCAATTTTATATGCGGAT
AGCATCACTAAATCTATGGAAAAAGCCATTACCGAAACGAATCGCCGTCGTGAAAAACAAATGAAATACAATGAAGAGCA
CGGCATTGTTCCACAGGCATTGAATAAGAAAGTGGGCGAGTTGTTAGATATTGGTCAAGGTGCAAATCAAAAAGCCAAAT
CGAAACAGCGTGGTAAAACAGCAGCTGAACCGACCGCACTTTACAATGCACCTAAATCCGCCAAAGAATTCCAACAACAA
ATTAAGAAATTGGAACAACAAATGTATAAATTTGCTCAAGATCTTGAGTTTGAAAAAGCCGCCGCAGTACGCGATAAGCT
TCATCAATTGAGAGAGCAATTTATGATATCGGAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(639-673)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Type III restriction enzyme, res subunit (ResIII)

(17-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.271

98.968

0.577
  uvrB Streptococcus pneumoniae R6

58.271

98.968

0.577
  uvrB Streptococcus pneumoniae D39

58.271

98.968

0.577