Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RDV53_RS07065 Genome accession   NZ_CP133470
Coordinates   1430968..1433049 (+) Length   693 a.a.
NCBI ID   WP_005695624.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425968..1438049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS07045 (RDV53_07045) gap 1426582..1427601 (-) 1020 WP_005695620.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  RDV53_RS07050 (RDV53_07050) gmk 1427821..1428447 (+) 627 WP_032822854.1 guanylate kinase -
  RDV53_RS07055 (RDV53_07055) rpoZ 1428507..1428773 (+) 267 WP_005695622.1 DNA-directed RNA polymerase subunit omega -
  RDV53_RS07060 (RDV53_07060) spoT 1428848..1430968 (+) 2121 WP_309201267.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  RDV53_RS07065 (RDV53_07065) recG 1430968..1433049 (+) 2082 WP_005695624.1 ATP-dependent DNA helicase RecG Machinery gene
  RDV53_RS07070 (RDV53_07070) murI 1433080..1433871 (+) 792 WP_005695625.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77779.23 Da        Isoelectric Point: 7.9032

>NTDB_id=799388 RDV53_RS07065 WP_005695624.1 1430968..1433049(+) (recG) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MSKQLLDAVPLTTLSGVGAAISDKLSRIGIHNLQDLLFHLPIRYEDRTRITPIADLRPEQYATIEGVVQTCEVAFGRRPI
LTVSLSDGTSKIMLRFFNFNAGMKNSFQIGTRVKAFGEIKRGRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKIQLTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQKVR
LGTQQFLALPLHYQTDLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFRRWLEPFGIDVGWLAGKVKGKARQAELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNACI
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAAFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAEFKVANLMRDRKMIPTVQHYAKALIVKYPDVAESLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=799388 RDV53_RS07065 WP_005695624.1 1430968..1433049(+) (recG) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGAGCAAACAACTTCTTGATGCCGTTCCTTTAACTACTTTGTCTGGTGTGGGAGCGGCAATTTCCGATAAATTAAGCCG
TATTGGAATTCATAATCTCCAAGACCTGCTTTTTCATTTACCTATCCGTTATGAAGATCGCACGAGAATTACGCCTATTG
CCGATCTTCGCCCTGAACAATATGCCACCATTGAAGGTGTTGTCCAAACCTGTGAAGTTGCCTTTGGGCGCCGTCCTATT
TTAACTGTAAGTCTTTCTGATGGAACGAGCAAAATTATGCTTCGTTTCTTCAATTTTAATGCAGGGATGAAAAATAGTTT
TCAGATTGGTACGCGCGTTAAAGCGTTTGGTGAAATTAAACGCGGGCGCTTTATGGCGGAAATTCATCATCCTGAGTATC
AAATTATACGGGATAATGCGCCATTAGTTTTAGAGGAAACGCTCACACCAATTTATTCCACAACGGAAGGTTTAAAACAA
AATTCATTACGTAAGCTAACCGATCAAGCATTGGCTTTACTCGATAAAATCCAATTAACGGAAATTTTACCTAATGAATT
TAATCCGCATCCTTTTAGCTTAAAGGATGCTATTCGATTTTTGCATCGTCCACCGCCAGATATCTCATTAGATATTTTGG
AGAAAGGACAGCATCCGGCACAACAACGACTTATCTTTGAAGAGCTTCTTGCACATAATCTTGCGATGCAAAAAGTGCGG
TTGGGTACGCAGCAGTTTTTAGCGTTGCCATTGCATTATCAAACTGATTTGAAACAACGTTTTCTTGCATCTTTGCCGTT
TCAACCAACCAATGCCCAAAATAGAGTGGTGGCCGATATTGAACAGGATTTAGCAAAAGATTATCCGATGATGCGGCTTG
TTCAAGGGGATGTAGGTTCGGGGAAAACATTAGTGGCAGCCTTAGCGGCCTTATTAGCGATTGATAATGGCAAACAAGTG
GCTTTAATGGCGCCAACAGAGATTTTAGCGGAACAGCATGCAAATAATTTTCGACGTTGGTTAGAGCCTTTTGGTATTGA
CGTCGGCTGGTTAGCGGGTAAGGTGAAAGGGAAAGCTCGCCAAGCTGAATTGGAAAAAATTAAGTCTGGTGCGGTACAAA
TGGTGGTGGGTACACATGCTTTATTCCAAGAAGAAGTAGAATTTGCCGATTTAGCCTTGGTGATTATTGATGAACAACAT
CGTTTTGGTGTGCATCAACGTTTAATGCTGCGAGAAAAAGGCGAAAAAGCAGGATTTTATCCCCATCAACTGATTATGAC
AGCTACGCCAATCCCGAGAACATTAGCAATGACGGTTTATGCCGATCTCGATACGTCTATTATCGATGAATTGCCTCCAG
GTAGAACGCCGATTACGACAGTTGTTATTTCTGAAGAACGCCGTGATGAAATCGTTGCTCGAGTCAAAAATGCCTGTATT
AATGAAAAACGTCAGGCTTATTGGGTTTGTACCTTGATTGATGAGTCTGAAGTGCTAGAAGCGCAAGCAGCCGAGGCCAT
TTGGGAAGATTTAACGAAAGCGCTGCCGATGCTTAAAATTGGTCTTGTGCATGGGCGAATGAAACCGCAAGAAAAACAAG
ATATTATGGCTGCCTTTAAAAATGCAGAACTCGATTTGCTTGTGGCCACAACCGTAATCGAAGTGGGCGTAGATGTGCCG
AATGCCAGTCTCATGATCATTGAAAATGCTGAGCGCTTAGGTTTATCACAACTCCATCAGTTACGTGGGCGAGTAGGGCG
TGGCAGTACGGCTTCTTTTTGTGTCTTAATGTATAAACCGCCGTTGGGTAAAGTTTCGCAAAAACGTTTACAGGTATTGC
GTGATAGTCAAGATGGCTTTGTGATTTCAGAGAAAGATTTAGAAATTCGCGGACCTGGTGAAGTGTTGGGCACTAAACAG
ACGGGTATCGCCGAATTTAAGGTGGCGAATTTAATGCGCGATCGTAAAATGATTCCAACTGTTCAACATTATGCTAAAGC
ATTAATAGTGAAATATCCTGATGTGGCAGAAAGTTTAATCCGCCGTTGGCTAAATAATCGAGAAATTTATTCGAATGCCT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(292-405)

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(481-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.889

97.403

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.52

94.372

0.382
  recG/mmsA Streptococcus pneumoniae R36A

40.52

94.372

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

39.079

97.114

0.38