Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   RDV50_RS09650 Genome accession   NZ_CP133462
Coordinates   2003824..2004474 (-) Length   216 a.a.
NCBI ID   WP_208648089.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1998824..2009474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09620 (RDV50_09620) trpE 1999070..2000545 (-) 1476 WP_137040877.1 anthranilate synthase component I -
  RDV50_RS09625 (RDV50_09625) - 2000681..2001058 (-) 378 WP_137040876.1 hypothetical protein -
  RDV50_RS09630 (RDV50_09630) - 2001195..2001815 (+) 621 WP_137040875.1 Smr/MutS family protein -
  RDV50_RS09635 (RDV50_09635) pilL 2001869..2002357 (-) 489 WP_137040874.1 PilX family type IV pilin Machinery gene
  RDV50_RS09640 (RDV50_09640) pilK 2002362..2002907 (-) 546 WP_137040873.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RDV50_RS09645 (RDV50_09645) pilJ 2002886..2003821 (-) 936 WP_308862660.1 pilus assembly protein PilW Machinery gene
  RDV50_RS09650 (RDV50_09650) pilV 2003824..2004474 (-) 651 WP_208648089.1 type IV pilus modification protein PilV Regulator
  RDV50_RS09655 (RDV50_09655) pilH 2004490..2005185 (-) 696 WP_137040872.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RDV50_RS09660 (RDV50_09660) dnaB 2005343..2006749 (-) 1407 WP_063075500.1 replicative DNA helicase -
  RDV50_RS09665 (RDV50_09665) - 2006904..2007485 (+) 582 WP_070460856.1 superoxide dismutase -
  RDV50_RS09670 (RDV50_09670) - 2007711..2009252 (+) 1542 WP_137040871.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23873.10 Da        Isoelectric Point: 7.8631

>NTDB_id=799329 RDV50_RS09650 WP_208648089.1 2003824..2004474(-) (pilV) [Neisseria subflava strain LMG 5313]
MNITNPTHLRSFKGRLKTSPTSSTPKLQSGMTLIEVLIAMFVLAIGVLALLAVQLRTVSNVRESENQTTVAQITQNLIEG
MLINPTLSEETDTAGEKTSRYKKSYDAYLKSDFKQTAKFEAKMTKAQLAQAQIAQFKTDLAKALPEAQVFSTICKDSSGA
EPTYEENGFNAKCDGKGDTTIVKVLWLQDVEEENSAKNLNTSGHHVVYTYQSRVRD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=799329 RDV50_RS09650 WP_208648089.1 2003824..2004474(-) (pilV) [Neisseria subflava strain LMG 5313]
ATGAACATTACTAATCCTACTCATCTCAGATCATTTAAAGGCCGTCTGAAAACGAGCCCAACAAGCTCTACTCCAAAACT
TCAATCAGGTATGACCCTGATTGAAGTTTTGATTGCCATGTTTGTCCTTGCTATCGGCGTACTCGCCCTGCTGGCTGTTC
AATTGCGTACCGTATCCAACGTACGTGAGTCTGAAAATCAAACCACAGTCGCCCAAATTACACAAAATCTGATTGAAGGC
ATGCTCATTAATCCGACGCTTTCTGAAGAAACCGATACTGCAGGGGAAAAAACCTCCCGTTATAAAAAATCCTATGATGC
CTACCTAAAATCCGACTTTAAACAAACTGCAAAATTTGAAGCCAAAATGACCAAAGCCCAACTTGCACAGGCTCAAATTG
CACAGTTTAAAACCGATTTAGCCAAAGCCCTTCCCGAAGCCCAAGTATTTTCGACCATCTGCAAAGATTCTTCCGGTGCA
GAGCCAACTTACGAAGAAAATGGGTTTAACGCAAAATGCGATGGCAAAGGCGACACGACCATCGTGAAAGTTTTATGGTT
GCAAGATGTCGAAGAAGAAAATAGCGCAAAAAATCTCAACACATCGGGGCATCACGTTGTCTATACCTACCAATCACGCG
TAAGAGACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

48.039

94.444

0.454
  pilV/pilI Neisseria gonorrhoeae MS11

48.5

92.593

0.449