Detailed information NTG0799327

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P0M09_RS01955
• Genome accession: NZ_CP119437
• Coordinates: 414675..415472 (+)
• Length: 265 a.a.
• NCBI ID: WP_004098693.1
• Uniprot ID: -
• Organism: Klebsiella michiganensis strain K689
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 409675..420472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P0M09_RS01920 (P0M09_01920)	gspH	409816..410328 (+)	513	WP_004098708.1	type II secretion system minor pseudopilin GspH	-
P0M09_RS01925 (P0M09_01925)	gspI	410325..410690 (+)	366	WP_004098707.1	type II secretion system minor pseudopilin GspI	-
P0M09_RS01930 (P0M09_01930)	gspJ	410687..411283 (+)	597	WP_004098705.1	type II secretion system minor pseudopilin GspJ	-
P0M09_RS01935 (P0M09_01935)	gspK	411280..412260 (+)	981	WP_004098702.1	type II secretion system minor pseudopilin GspK	-
P0M09_RS01940 (P0M09_01940)	gspL	412253..413446 (+)	1194	WP_004098701.1	type II secretion system protein GspL	-
P0M09_RS01945 (P0M09_01945)	gspM	413439..413924 (+)	486	WP_004098698.1	type II secretion system protein GspM	-
P0M09_RS01950 (P0M09_01950)	-	413914..414672 (+)	759	WP_004098694.1	type II secretion system protein N	-
P0M09_RS01955 (P0M09_01955)	pilD	414675..415472 (+)	798	WP_004098693.1	A24 family peptidase	Machinery gene
P0M09_RS01960 (P0M09_01960)	hrpB	415570..417999 (-)	2430	WP_004098692.1	ATP-dependent helicase HrpB	-
P0M09_RS01965 (P0M09_01965)	thpR	418072..418608 (+)	537	WP_004098691.1	RNA 2',3'-cyclic phosphodiesterase	-
P0M09_RS01970 (P0M09_01970)	sfsA	418608..419324 (+)	717	WP_004098690.1	DNA/RNA nuclease SfsA	-
P0M09_RS01975 (P0M09_01975)	dksA	419489..419944 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29114.76 Da
• Isoelectric Point: 8.0074

>NTDB_id=799327 P0M09_RS01955 WP_004098693.1 414675..415472(+) (pilD) [Klebsiella michiganensis strain K689]
METIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISPRYPLMELATGALFMLVGYLIPPGIPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV

Nucleotide

• Length: 798 bp

>NTDB_id=799327 P0M09_RS01955 WP_004098693.1 414675..415472(+) (pilD) [Klebsiella michiganensis strain K689]
ATGGAAACTATCGCGCTGTTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTGAATCTCTGCC
TCCCCGCGTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGTGCGCGCTGCTGCGGGCAGCCGATCTCGCCTCGTTATCCTCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGATACCTGATACCTCCGGGCATACCGCTGCTGGGCGGGCTAATTTTCGTATCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGTTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCTGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.077	100	0.502
pilD	Neisseria gonorrhoeae MS11	47.826	95.472	0.457
pilD	Vibrio campbellii strain DS40M4	43.636	100	0.453
pilD	Acinetobacter nosocomialis M2	45.56	97.736	0.445
pilD	Acinetobacter baumannii D1279779	45.174	97.736	0.442