Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RDV50_RS04775 Genome accession   NZ_CP133462
Coordinates   978429..980453 (-) Length   674 a.a.
NCBI ID   WP_137041464.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973429..985453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04755 (RDV50_04755) - 974086..975867 (+) 1782 WP_137041467.1 extracellular solute-binding protein -
  RDV50_RS04760 (RDV50_04760) - 976283..976561 (+) 279 WP_137041466.1 helix-turn-helix transcriptional regulator -
  RDV50_RS04765 (RDV50_04765) xth 976729..977499 (+) 771 WP_137041465.1 exodeoxyribonuclease III -
  RDV50_RS04770 (RDV50_04770) - 977748..978383 (-) 636 WP_039405269.1 HEPN domain-containing protein -
  RDV50_RS04775 (RDV50_04775) uvrB 978429..980453 (-) 2025 WP_137041464.1 excinuclease ABC subunit UvrB Machinery gene
  RDV50_RS04780 (RDV50_04780) comP 980708..981202 (-) 495 WP_167480347.1 type IV pilin protein Machinery gene
  RDV50_RS04785 (RDV50_04785) comE 981386..981673 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV50_RS04790 (RDV50_04790) - 981953..982759 (+) 807 WP_137041463.1 integrase core domain-containing protein -
  RDV50_RS04795 (RDV50_04795) - 983114..984520 (+) 1407 WP_137041462.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 674 a.a.        Molecular weight: 76660.21 Da        Isoelectric Point: 5.0472

>NTDB_id=799299 RDV50_RS04775 WP_137041464.1 978429..980453(-) (uvrB) [Neisseria subflava strain LMG 5313]
MEVIQYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPKQIKKQVKDIIDGVYHEEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGA

Nucleotide


Download         Length: 2025 bp        

>NTDB_id=799299 RDV50_RS04775 WP_137041464.1 978429..980453(-) (uvrB) [Neisseria subflava strain LMG 5313]
ATGGAAGTCATCCAATACCCCGATTCCCCCTTCAAACTCCACCAGCCCTTCCCACCTGCCGGCGACCAGCCCACCGCCAT
TGCCGGCCTGCTCGAAGGACTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGAAAAACTTATA
CCATGGCGAATGTTATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTCTAT
GCCGAAATGCGCGAGTTTTTCCCCGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGATTTGTTCATCGAAAAAGACAGCGCAATCAACGAACACATCGAACAAATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGACGTGATTATTGTCGCTACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGCATCAGCCTGTTTGATGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTG
CACCAACGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTCTTGCGCGCCTGCGA
ATCCATCAAAGAAGAACTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAACAACAGCGCATCGAAC
AACGCACCCGCTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTACTCCCGCCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGACTACGGCTTCCGCC
TACCTTCCGCCCGCGACAACCGTCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGGCAAGTGGTCGAACAAGTCGTCCGCCCCACCGGGTTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTCGATGATTTAATGAGTGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TGCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGTTAC
CTGCACAGCGACATCGATACCGTCGAGCGCGTTGAAATCATTAGAGATTTGCGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCTTGGACATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCCCACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGTAACGTGAACGGCGTCGCCATTCTGTACGCCGAC
AAAATCACCGACTCCATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGAGAAAAACAGATTAAATTCAATGAAGAACA
CGGCATCGTACCGAAACAAATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACGGCGGCAAAG
GTCGTCTGAAAGGCAAAAACAAAGTTAAAGTCGGCGAAATCCACAACGAAGAAGACGCAATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCGGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTTCTTCGTGATAGAATTCGGGGGATTAA
GGAAGGGTTGTTGTTTGGGGCGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB interaction domain (UvrB_inter)

(165-255)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB/uvrC motif (UVR)

(635-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.354

98.368

0.545
  uvrB Streptococcus pneumoniae R6

55.354

98.368

0.545
  uvrB Streptococcus pneumoniae D39

55.354

98.368

0.545