Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   P1T45_RS05040 Genome accession   NZ_CP119427
Coordinates   913789..915018 (+) Length   409 a.a.
NCBI ID   WP_003103169.1    Uniprot ID   A0A0E2URT0
Organism   Streptococcus parauberis strain KSP45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 908789..920018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS05020 (P1T45_05025) - 909515..910798 (-) 1284 WP_003106609.1 hydroxymethylglutaryl-CoA reductase, degradative -
  P1T45_RS05025 (P1T45_05030) - 910795..911961 (-) 1167 WP_003104825.1 hydroxymethylglutaryl-CoA synthase -
  P1T45_RS05030 (P1T45_05035) - 912153..912992 (+) 840 WP_003105934.1 thymidylate synthase -
  P1T45_RS05035 (P1T45_05040) - 913069..913584 (+) 516 WP_003104878.1 dihydrofolate reductase -
  P1T45_RS05040 (P1T45_05045) clpX 913789..915018 (+) 1230 WP_003103169.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  P1T45_RS05045 (P1T45_05050) yihA 915027..915626 (+) 600 WP_003104323.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  P1T45_RS05050 (P1T45_05055) - 915732..916454 (+) 723 WP_308686845.1 hypothetical protein -
  P1T45_RS05055 (P1T45_05060) clpC 916477..918585 (-) 2109 WP_004234254.1 AAA family ATPase Regulator
  P1T45_RS05060 (P1T45_05065) rplJ 919035..919535 (+) 501 WP_003104757.1 50S ribosomal protein L10 -
  P1T45_RS05065 (P1T45_05070) rplL 919601..919966 (+) 366 WP_003103838.1 50S ribosomal protein L7/L12 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45058.55 Da        Isoelectric Point: 4.4670

>NTDB_id=799252 P1T45_RS05040 WP_003103169.1 913789..915018(+) (clpX) [Streptococcus parauberis strain KSP45]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=799252 P1T45_RS05040 WP_003103169.1 913789..915018(+) (clpX) [Streptococcus parauberis strain KSP45]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2URT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.797

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.359

98.044

0.553