Detailed information NTG0799253

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: P1T45_RS05055
• Genome accession: NZ_CP119427
• Coordinates: 916477..918585 (-)
• Length: 702 a.a.
• NCBI ID: WP_004234254.1
• Uniprot ID: A0AAE4KV60
• Organism: Streptococcus parauberis strain KSP45
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 911477..923585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P1T45_RS05030 (P1T45_05035)	-	912153..912992 (+)	840	WP_003105934.1	thymidylate synthase	-
P1T45_RS05035 (P1T45_05040)	-	913069..913584 (+)	516	WP_003104878.1	dihydrofolate reductase	-
P1T45_RS05040 (P1T45_05045)	clpX	913789..915018 (+)	1230	WP_003103169.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
P1T45_RS05045 (P1T45_05050)	yihA	915027..915626 (+)	600	WP_003104323.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
P1T45_RS05050 (P1T45_05055)	-	915732..916454 (+)	723	WP_308686845.1	hypothetical protein	-
P1T45_RS05055 (P1T45_05060)	clpC	916477..918585 (-)	2109	WP_004234254.1	AAA family ATPase	Regulator
P1T45_RS05060 (P1T45_05065)	rplJ	919035..919535 (+)	501	WP_003104757.1	50S ribosomal protein L10	-
P1T45_RS05065 (P1T45_05070)	rplL	919601..919966 (+)	366	WP_003103838.1	50S ribosomal protein L7/L12	-
P1T45_RS05070 (P1T45_05075)	-	920494..920691 (+)	198	WP_230625299.1	hypothetical protein	-
P1T45_RS05075 (P1T45_05080)	-	920691..921545 (+)	855	WP_004234250.1	replication initiator protein A	-
P1T45_RS05080 (P1T45_05085)	-	921542..921703 (+)	162	WP_003104080.1	hypothetical protein	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77713.58 Da
• Isoelectric Point: 4.8331

>NTDB_id=799253 P1T45_RS05055 WP_004234254.1 916477..918585(-) (clpC) [Streptococcus parauberis strain KSP45]
MTNYYGKDPFGSMDDIFNQLMGNTGGYQTENRRYLVNGREMTPEEFQEYRQTGKLSSTAPTQEQGYPQNQKEDGILNQLG
TNLTEEARQGHLDPVIGRNKEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVAGDVPAAIKNKEIISIDISGL
EAGTQYRGAFEENIQNLIKEVKEAGNVILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAVDYSVQYIPQRSLPDKAIDLIDMTAAHLAA
QHPVTDLKSLETAIASEKDKQEKAVAAEDYELALQAKVRIEELQKQMANHTEGQKVTATINDVAESVERLTGVPVSNMGA
SDLERLKEIGNRLRGHVIGQDQAVQAVAKAIRRNRAGFDDDNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTIDFKNT
VIIATSNAGFGNEALTGQEDHDQKIMDRIAPYFRPEFLNRFNGVIEFSHLEKKDLKEIVELMLTEVNQTINKKGITLEVT
EPVKEELIELGYDKAMGVRPLRRVIEQEIRDRITDYYLEHPDDKHLKANLADGQIVISKQDK

Nucleotide

• Length: 2109 bp

>NTDB_id=799253 P1T45_RS05055 WP_004234254.1 916477..918585(-) (clpC) [Streptococcus parauberis strain KSP45]
ATGACAAACTATTATGGAAAAGACCCTTTTGGTAGCATGGATGACATTTTTAATCAATTGATGGGTAACACAGGCGGTTA
TCAAACTGAAAATCGTCGTTACCTAGTTAATGGGCGTGAAATGACACCTGAAGAATTTCAAGAATATCGACAAACTGGTA
AGCTCAGTTCTACTGCTCCTACTCAGGAACAAGGCTATCCCCAAAATCAAAAAGAAGATGGCATTCTAAACCAATTAGGT
ACCAACTTAACTGAAGAAGCACGACAAGGACACTTAGATCCAGTCATTGGACGAAATAAAGAAATTCAAGATACAGCTGA
AATATTAGCTCGCCGGACCAAGAACAATCCCGTTCTAGTAGGTGATGCGGGGGTTGGTAAAACAGCTGTGGTCGAAGGCT
TAGCCCAAGCTATCGTTGCTGGTGACGTCCCTGCTGCCATTAAAAACAAAGAAATTATTTCTATTGATATTTCCGGCTTA
GAAGCAGGTACTCAATACCGTGGTGCTTTTGAAGAAAATATTCAGAATTTAATTAAAGAAGTTAAAGAAGCCGGGAATGT
TATCCTCTTCTTTGATGAAATTCATCAAATTTTAGGCGCTGGCTCAACAGGTGGTGATTCTGGTTCCAAAGGCTTGGCCG
ATATTCTTAAACCAGCCCTATCTCGTGGCGAGTTGACCGTCATCGGTGCGACAACTCAAGATGAATATCGAAACACTATT
CTGAAAAATGCGGCCTTGGCTCGTCGTTTTAACGAAGTTAAAGTCAATGCGCCTTCTGCCGAAGATACCTTCCACATTTT
GATGGGTATCAGGAATCTTTATGAGCAACACCACAACGTCATTCTTCCGGATTCTGTTTTGAAAGCAGCCGTGGATTACT
CCGTTCAGTACATTCCACAGCGTAGTCTTCCAGACAAAGCCATCGATTTAATTGACATGACGGCTGCCCATTTAGCTGCG
CAACACCCAGTCACTGATTTGAAGAGTCTTGAAACAGCAATTGCTAGTGAGAAAGACAAGCAAGAAAAGGCTGTCGCTGC
AGAAGATTATGAGTTAGCCTTGCAAGCTAAAGTACGAATTGAAGAATTACAAAAGCAAATGGCAAACCATACCGAAGGTC
AAAAAGTGACCGCAACCATCAACGATGTCGCCGAATCAGTTGAACGTCTAACCGGCGTACCAGTTTCCAATATGGGCGCA
AGTGACTTAGAACGTTTGAAAGAAATTGGCAACCGACTTAGAGGACATGTCATCGGACAGGATCAAGCTGTTCAAGCAGT
CGCAAAGGCTATCCGTCGTAACCGTGCCGGCTTTGATGATGACAATCGCCCAATTGGGTCATTCCTCTTTGTTGGTCCGA
CCGGCGTTGGTAAAACGGAATTAGCCAAACAGCTTGCACTTGACATGTTTGGTTCCAAGGATGCGATCATTCGTTTAGAT
ATGTCAGAATACAGTGATCGCACTGCCGTTTCTAAATTGATTGGGACTACTGCTGGTTATGTTGGTTACGACGACAATCA
ATACACATTAACTGAACGTGTCCGTCGTAATCCATACTCAATTATTTTACTGGATGAAATTGAAAAAGCAGACCCACAAG
TCATTACCCTACTACTCCAAGTATTAGATGATGGTCGTTTAACTGATGGCCAAGGTAATACGATTGACTTCAAAAATACA
GTGATTATTGCTACATCTAATGCTGGTTTTGGCAATGAAGCATTAACGGGTCAAGAAGATCATGACCAAAAAATTATGGA
CCGAATCGCTCCTTATTTTAGACCTGAATTCTTAAATCGTTTTAATGGTGTGATAGAATTCTCACATCTAGAAAAAAAGG
ATTTGAAAGAAATTGTTGAATTAATGTTAACGGAAGTTAATCAAACAATCAATAAAAAAGGTATCACTTTAGAAGTAACA
GAACCTGTTAAAGAGGAACTAATTGAATTAGGATATGACAAAGCTATGGGAGTTAGACCATTACGCCGTGTCATTGAACA
AGAAATCCGTGACCGTATAACAGACTATTATTTGGAACATCCCGATGATAAACATCTAAAAGCAAATTTAGCAGATGGTC
AAATTGTGATTAGTAAACAAGACAAATGA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA lid domain (AAA_lid_9) (259-353)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-602)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.515	100	0.489
clpE	Streptococcus mutans UA159	47.532	100	0.48
clpE	Streptococcus pneumoniae TIGR4	46.968	100	0.474
clpE	Streptococcus pneumoniae Rx1	46.968	100	0.474
clpE	Streptococcus pneumoniae D39	46.968	100	0.474
clpE	Streptococcus pneumoniae R6	46.968	100	0.474
clpC	Bacillus subtilis subsp. subtilis str. 168	44.651	91.88	0.41
clpC	Streptococcus pneumoniae TIGR4	41.617	95.157	0.396
clpC	Streptococcus pneumoniae Rx1	41.617	95.157	0.396
clpC	Streptococcus pneumoniae D39	41.617	95.157	0.396
clpC	Streptococcus mutans UA159	40.246	92.735	0.373
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.842	88.177	0.369
clpC	Streptococcus thermophilus LMG 18311	41.28	89.031	0.368
clpC	Streptococcus thermophilus LMD-9	41.346	88.889	0.368