Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P0G38_RS17175 Genome accession   NZ_CP119393
Coordinates   3655460..3655984 (-) Length   174 a.a.
NCBI ID   WP_005226365.1    Uniprot ID   A0A505IXH5
Organism   Enterococcus casseliflavus strain ASE4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3650460..3660984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0G38_RS17155 (P0G38_17155) dnaB 3651565..3652935 (-) 1371 WP_270289958.1 replicative DNA helicase -
  P0G38_RS17160 (P0G38_17160) rplI 3653044..3653496 (-) 453 WP_275853465.1 50S ribosomal protein L9 -
  P0G38_RS17165 (P0G38_17165) - 3653512..3654960 (-) 1449 WP_015508681.1 DHH family phosphoesterase -
  P0G38_RS17170 (P0G38_17170) rpsR 3655200..3655436 (-) 237 WP_005226367.1 30S ribosomal protein S18 -
  P0G38_RS17175 (P0G38_17175) ssb 3655460..3655984 (-) 525 WP_005226365.1 single-stranded DNA-binding protein Machinery gene
  P0G38_RS17180 (P0G38_17180) rpsF 3656028..3656327 (-) 300 WP_005226363.1 30S ribosomal protein S6 -
  P0G38_RS17185 (P0G38_17185) gyrA 3656591..3659116 (-) 2526 WP_071859208.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19149.65 Da        Isoelectric Point: 4.7093

>NTDB_id=798835 P0G38_RS17175 WP_005226365.1 3655460..3655984(-) (ssb) [Enterococcus casseliflavus strain ASE4]
MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSNNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPF
GNSSIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=798835 P0G38_RS17175 WP_005226365.1 3655460..3655984(-) (ssb) [Enterococcus casseliflavus strain ASE4]
TTGATTAATAATGTTGTACTAGTAGGAAGACTAACCAAAGATCCTGATTTACGTTACACTTCTAATGGCACTGGTGTCGC
AACCTTTACCTTGGCGGTAAACCGCAATTTTACCAACCAAAGTGGAGAGCGCGAAGCTGATTTCATCAACTGTGTTATTT
GGAGAAAACCAGCGGAAACATTAGCAAACTATGCACGCAAAGGAACTTTATTAGGGGTTACTGGACGTATTCAAACCCGT
TCATACGACAACCAACAAGGCCAACGTGTTTATGTAACAGAAGTCGTTGCTGACAACTTCCAATTATTAGAGTCGCGGAA
TGCTTCCGAGCAAAGACGCACAACTGATAGCGGATCTGGCAGTAACAATACGTATAACTCAAACAGTTCTTCTGGATTTG
GTAACAATAACTCAAATCAAACTCAATCCTCTCAACCATCAGGAATGCCTAATTTTGATCGAGACAACTCCGATCCATTC
GGAAACTCATCAATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A505IXH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.795

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.866

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385