Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PZ739_RS07390 Genome accession   NZ_CP119382
Coordinates   1621829..1624045 (+) Length   738 a.a.
NCBI ID   WP_275749739.1    Uniprot ID   -
Organism   Pseudomonas kermanshahensis strain Mr36     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1616829..1629045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ739_RS07370 (PZ739_07370) - 1618712..1619335 (+) 624 WP_099453294.1 glutathione S-transferase -
  PZ739_RS07375 (PZ739_07375) - 1619469..1620401 (+) 933 WP_275749731.1 ABC transporter ATP-binding protein -
  PZ739_RS07380 (PZ739_07380) - 1620398..1621177 (+) 780 WP_275749733.1 ABC transporter permease -
  PZ739_RS07385 (PZ739_07385) - 1621061..1621687 (-) 627 WP_275749737.1 DUF2062 domain-containing protein -
  PZ739_RS07390 (PZ739_07390) comA 1621829..1624045 (+) 2217 WP_275749739.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PZ739_RS07395 (PZ739_07395) exbB 1624131..1624766 (+) 636 WP_027596066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PZ739_RS07400 (PZ739_07400) - 1624763..1625197 (+) 435 WP_186679592.1 ExbD/TolR family protein -
  PZ739_RS07405 (PZ739_07405) lpxK 1625197..1626207 (+) 1011 WP_275749743.1 tetraacyldisaccharide 4'-kinase -
  PZ739_RS07410 (PZ739_07410) - 1626251..1626436 (+) 186 WP_003247142.1 Trm112 family protein -
  PZ739_RS07415 (PZ739_07415) kdsB 1626433..1627197 (+) 765 WP_275749745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PZ739_RS07420 (PZ739_07420) - 1627197..1627661 (+) 465 WP_275749747.1 low molecular weight protein-tyrosine-phosphatase -
  PZ739_RS07425 (PZ739_07425) murB 1627658..1628677 (+) 1020 WP_275749749.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79366.99 Da        Isoelectric Point: 9.9863

>NTDB_id=798750 PZ739_RS07390 WP_275749739.1 1621829..1624045(+) (comA) [Pseudomonas kermanshahensis strain Mr36]
MRTGMFALALGLLCLGFLPELPSVGWLLVLLVGAVASLFTRFWPVGCFLLGLCWACGSAQRALDDRLAPELDGRTLWLEG
KVVGLPSRTAQGVRFELEQPHSRRGELPRRLQLSWFNGPAVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQVVSAVAGSWRDQLRQRLLAVEAHGRQAALVALVLGDGAGLPREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACGLAMTAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPVAGVGEALLWLAGGLLEVLFRVLALAASWRPAWVPPALPLWAWLVVCVGALLVLLPRGVPLRGLGGLMLLALW
VPRESVPLGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAKGEYDAGERVVLPTLRKLGVSHLDAMLISHAHADHAGGAL
AIAQGIPVTRVLGGEGLEGLGLQSCVTGEQWEWDGVRFSLWHWAEGQSSNDRSCVLLVEAQGERLLLAGDLEAAAERAWL
ASTETPRIDWLQAPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHAQVLERYRRHGLAIHDTAVEGALRLVLGRQG
DVEGVRGQRRFWREAGSG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=798750 PZ739_RS07390 WP_275749739.1 1621829..1624045(+) (comA) [Pseudomonas kermanshahensis strain Mr36]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGCTCTGCCTGGGCTTTCTCCCCGAATTGCCATCGGTCGGATGGTT
GCTTGTGCTGTTGGTCGGCGCTGTCGCCAGCCTGTTCACGCGGTTTTGGCCCGTGGGCTGTTTTCTGTTGGGTTTGTGCT
GGGCGTGCGGGTCCGCCCAGCGAGCGCTGGATGATCGACTCGCGCCTGAACTGGATGGCCGCACGTTGTGGCTGGAGGGC
AAGGTTGTCGGCCTGCCGAGCCGTACCGCGCAGGGCGTGCGCTTCGAGCTGGAGCAGCCCCACTCACGGCGTGGCGAACT
GCCCCGGCGCTTGCAACTGAGCTGGTTCAACGGGCCGGCTGTGCGTGCGGGCGAACAGTGGCGGTTGGCAGTGACCCTGC
AGCGGCCTGCCGGGCTGCTCAACCCCCATGGGCCTGATCGAGAGGCACAGTTGCTGGCTCGGCGGGTGGGGGCTACCGGC
ACGGTCAAGGCCGGGCAGGTAGTGAGCGCTGTAGCGGGCAGCTGGCGAGACCAACTGCGGCAACGGTTGTTGGCGGTCGA
GGCCCATGGCCGGCAAGCGGCGTTGGTGGCCTTGGTGCTGGGCGACGGTGCGGGCCTGCCCCGCGAGGACTGGCAGACGC
TGCAGGCCACGGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGGTGGCGGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCACGCTGGGGCCTGTGGCCCGCACGGCTGCCCTGGCTGCCTTCGGCCTGCGGCCTGGCGATGACCGC
AGCGCTGGCCTACGGCTGGCTTGCCGGTGGCGGTGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCGGTCGTGTTGCTTT
GGCGTCTGCGCTTTCGTCACCTTGGTGCAACGTTGCCTTTGCTGCTGGCGCTGGTCGCCGTGCTGTTGTTCGAACCCTTG
GCGGCGCTGTTGCCGGGGTTCTGGCTGTCGTTTGCCGCCGTGGCGACCTTGATCTACTGCTTCAGTGCTCGCTTAGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAGTGGGTGATTGCCATCGGTTTGCTGCCGGTGCTGCTGGCCACTGGCT
TGCCAGTGAGCCTGAGTGCGCCCCTGGCCAACTTGCTGGCGGTGCCGTGGGTCAGCCTTGCAGTGTTGCCGTTGGCTTTG
CTGGGCACGCTGTTGTTGCCCGTGGCGGGTGTTGGCGAAGCGTTGCTGTGGCTGGCCGGGGGCTTGCTGGAGGTGCTGTT
CAGGGTCCTGGCCCTGGCCGCGAGCTGGCGCCCGGCGTGGGTGCCGCCGGCCTTGCCGCTGTGGGCTTGGTTAGTGGTGT
GCGTGGGTGCGTTGCTGGTGCTGCTACCCCGTGGCGTGCCCTTGCGTGGGCTGGGCGGGCTCATGCTGTTGGCGTTATGG
GTGCCCCGCGAGTCGGTGCCCTTGGGGCAGGTAGAAGTCTGGCAGTTGGACGTCGGCCAGGGGCTGGCGGTGCTGCTGCG
TACCCGCCATCACAGCCTGCTCTACGATGCGGGGCCAGCAAAAGGGGAGTACGACGCGGGGGAGCGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGCGTAAGCCACTTGGATGCGATGCTGATCAGCCACGCCCATGCCGACCATGCCGGGGGCGCGCTG
GCCATTGCGCAGGGCATCCCGGTCACGCGGGTGCTCGGTGGCGAGGGGCTAGAGGGCCTTGGGCTGCAGTCGTGTGTCAC
GGGTGAGCAATGGGAGTGGGATGGCGTGCGTTTTTCCCTGTGGCATTGGGCTGAAGGGCAGAGCAGCAACGACCGCTCAT
GCGTGCTGCTGGTCGAGGCGCAAGGGGAGCGCTTGCTGTTGGCAGGCGATTTGGAAGCCGCTGCCGAACGGGCCTGGTTG
GCGTCTACTGAAACACCCCGCATCGATTGGCTGCAGGCCCCGCACCATGGCAGCCGCAGTTCGTCTACCGAGGCATTCAT
CCGCGCCACGGCGCCACGTGGGGTGCTGATTTCGCGGGGGCGCAACAATGGTTTTGGTCATCCGCATGCCCAAGTGCTCG
AGCGCTATCGGCGGCATGGGCTGGCGATTCATGATACAGCGGTGGAGGGCGCGTTGCGCTTGGTGCTAGGGCGTCAGGGG
GACGTTGAGGGGGTGCGGGGGCAGCGGCGCTTCTGGCGTGAAGCCGGCAGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(9-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.944

97.425

0.584
  comA Ralstonia pseudosolanacearum GMI1000

36.178

100

0.385