Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PZ739_RS07395 Genome accession   NZ_CP119382
Coordinates   1624131..1624766 (+) Length   211 a.a.
NCBI ID   WP_027596066.1    Uniprot ID   A0A0Q4NFV9
Organism   Pseudomonas kermanshahensis strain Mr36     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619131..1629766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ739_RS07375 (PZ739_07375) - 1619469..1620401 (+) 933 WP_275749731.1 ABC transporter ATP-binding protein -
  PZ739_RS07380 (PZ739_07380) - 1620398..1621177 (+) 780 WP_275749733.1 ABC transporter permease -
  PZ739_RS07385 (PZ739_07385) - 1621061..1621687 (-) 627 WP_275749737.1 DUF2062 domain-containing protein -
  PZ739_RS07390 (PZ739_07390) comA 1621829..1624045 (+) 2217 WP_275749739.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PZ739_RS07395 (PZ739_07395) exbB 1624131..1624766 (+) 636 WP_027596066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PZ739_RS07400 (PZ739_07400) - 1624763..1625197 (+) 435 WP_186679592.1 ExbD/TolR family protein -
  PZ739_RS07405 (PZ739_07405) lpxK 1625197..1626207 (+) 1011 WP_275749743.1 tetraacyldisaccharide 4'-kinase -
  PZ739_RS07410 (PZ739_07410) - 1626251..1626436 (+) 186 WP_003247142.1 Trm112 family protein -
  PZ739_RS07415 (PZ739_07415) kdsB 1626433..1627197 (+) 765 WP_275749745.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PZ739_RS07420 (PZ739_07420) - 1627197..1627661 (+) 465 WP_275749747.1 low molecular weight protein-tyrosine-phosphatase -
  PZ739_RS07425 (PZ739_07425) murB 1627658..1628677 (+) 1020 WP_275749749.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22887.22 Da        Isoelectric Point: 7.3616

>NTDB_id=798751 PZ739_RS07395 WP_027596066.1 1624131..1624766(+) (exbB) [Pseudomonas kermanshahensis strain Mr36]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=798751 PZ739_RS07395 WP_027596066.1 1624131..1624766(+) (exbB) [Pseudomonas kermanshahensis strain Mr36]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCACCACACCTGCTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCGATGGCTCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCATGGGGTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGGGGTATTTCCAAGGCCCTGGTCACCACCGCA
GCGGGCTTGATGATCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGTCGCATCGATGAGCTGGTGGTTGGCAT
GGAACAAGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4NFV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82