Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | RB649_RS09500 | Genome accession | NZ_CP133179 |
| Coordinates | 1753135..1754325 (+) | Length | 396 a.a. |
| NCBI ID | WP_011174200.1 | Uniprot ID | Q72GK3 |
| Organism | Thermus thermophilus HB27 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1748135..1759325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RB649_RS09475 (RB649_09475) | - | 1748345..1748737 (+) | 393 | WP_011174195.1 | hypothetical protein | - |
| RB649_RS09480 (RB649_09480) | - | 1748734..1749474 (+) | 741 | WP_011174196.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| RB649_RS09485 (RB649_09485) | - | 1749471..1750310 (+) | 840 | WP_011174197.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| RB649_RS09490 (RB649_09490) | - | 1750320..1751507 (+) | 1188 | WP_011174198.1 | hypothetical protein | - |
| RB649_RS09495 (RB649_09495) | pilB/pilB1 | 1751485..1753131 (+) | 1647 | WP_011174199.1 | GspE/PulE family protein | Machinery gene |
| RB649_RS09500 (RB649_09500) | pilC | 1753135..1754325 (+) | 1191 | WP_011174200.1 | type II secretion system F family protein | Machinery gene |
| RB649_RS09505 (RB649_09505) | - | 1754322..1754789 (+) | 468 | WP_011174201.1 | hypothetical protein | - |
| RB649_RS09510 (RB649_09510) | - | 1754757..1755488 (-) | 732 | WP_011174202.1 | pseudouridine synthase | - |
| RB649_RS09515 (RB649_09515) | - | 1755485..1755682 (-) | 198 | WP_041443637.1 | hypothetical protein | - |
| RB649_RS09520 (RB649_09520) | - | 1755702..1756829 (+) | 1128 | WP_011227734.1 | alanine--tRNA ligase-related protein | - |
| RB649_RS09525 (RB649_09525) | - | 1756910..1757581 (+) | 672 | WP_011174204.1 | response regulator transcription factor | - |
| RB649_RS09530 (RB649_09530) | - | 1757578..1758471 (+) | 894 | WP_011174205.1 | ATP-binding protein | - |
| RB649_RS09535 (RB649_09535) | phoU | 1758486..1759148 (+) | 663 | WP_011174206.1 | phosphate signaling complex protein PhoU | - |
Sequence
Protein
Download Length: 396 a.a. Molecular weight: 43906.80 Da Isoelectric Point: 10.1885
>NTDB_id=798714 RB649_RS09500 WP_011174200.1 1753135..1754325(+) (pilC) [Thermus thermophilus HB27]
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVAQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWRRTPGGAR
ALDGLLLRLPLVGPVLHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQAAFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVAQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWRRTPGGAR
ALDGLLLRLPLVGPVLHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQAAFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR
Nucleotide
Download Length: 1191 bp
>NTDB_id=798714 RB649_RS09500 WP_011174200.1 1753135..1754325(+) (pilC) [Thermus thermophilus HB27]
ATGCGCTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
AGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CCCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGGCCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCCATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCCTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTCTC
CCGGCTTTATGGGGCAGCGGGGGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGCGCCTTCTACCTCCTTCGGGCCTGGCGCCGGACCCCGGGAGGGGCGAGG
GCCCTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCGTCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCT
TGGCCGAGGCCCTGGACCGGGTGCTGGAGCGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAAGCCCTC
TTCCTCCCCATCCTGGTGCGGCTTGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGGCCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTCGCCCTGTATCTGCCCCTCTTTGACCTGTCCCGGATCCTGCGCCGATGA
ATGCGCTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
AGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CCCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGGCCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCCATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCCTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTCTC
CCGGCTTTATGGGGCAGCGGGGGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGCGCCTTCTACCTCCTTCGGGCCTGGCGCCGGACCCCGGGAGGGGCGAGG
GCCCTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCGTCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCT
TGGCCGAGGCCCTGGACCGGGTGCTGGAGCGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAAGCCCTC
TTCCTCCCCATCCTGGTGCGGCTTGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGGCCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTCGCCCTGTATCTGCCCCTCTTTGACCTGTCCCGGATCCTGCGCCGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
35.91 |
100 |
0.364 |