Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PY250_RS13890 Genome accession   NZ_CP119334
Coordinates   2963821..2964453 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio alginolyticus strain 2-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958821..2969453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS13865 (PY250_13865) - 2958840..2960759 (+) 1920 WP_042523641.1 ABC transporter ATP-binding protein -
  PY250_RS13870 (PY250_13870) - 2960756..2961244 (+) 489 WP_033907158.1 TIGR02444 family protein -
  PY250_RS13875 (PY250_13875) - 2961332..2962339 (+) 1008 WP_033907159.1 hydrolase -
  PY250_RS13880 (PY250_13880) - 2962373..2962585 (+) 213 WP_005382815.1 YheU family protein -
  PY250_RS13885 (PY250_13885) - 2962711..2963580 (+) 870 WP_005381434.1 phosphoribulokinase -
  PY250_RS13890 (PY250_13890) crp 2963821..2964453 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  PY250_RS13895 (PY250_13895) - 2964590..2965381 (-) 792 WP_042523639.1 DUF1338 domain-containing protein -
  PY250_RS13900 (PY250_13900) astD 2965630..2967087 (-) 1458 WP_025768787.1 succinylglutamate-semialdehyde dehydrogenase -
  PY250_RS13905 (PY250_13905) astA 2967116..2968135 (-) 1020 WP_042523637.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=798565 PY250_RS13890 WP_005381432.1 2963821..2964453(+) (crp) [Vibrio alginolyticus strain 2-1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=798565 PY250_RS13890 WP_005381432.1 2963821..2964453(+) (crp) [Vibrio alginolyticus strain 2-1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAAACCATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471