Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MT340_RS12035 Genome accession   NZ_CP119327
Coordinates   2433702..2434214 (-) Length   170 a.a.
NCBI ID   WP_103298372.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2428702..2439214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS11995 (MT340_011995) - 2429078..2429656 (-) 579 WP_243590141.1 histidine phosphatase family protein -
  MT340_RS12000 (MT340_012000) - 2429961..2430038 (+) 78 Protein_2315 hypothetical protein -
  MT340_RS12005 (MT340_012005) - 2430110..2430358 (-) 249 WP_243590142.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  MT340_RS12010 (MT340_012010) - 2430481..2430723 (-) 243 WP_243590143.1 DUF3923 family protein -
  MT340_RS12015 (MT340_012015) - 2430802..2431551 (-) 750 WP_243590144.1 amidohydrolase family protein -
  MT340_RS12020 (MT340_012020) - 2431772..2432029 (+) 258 WP_103298375.1 transcriptional regulator -
  MT340_RS12025 (MT340_012025) - 2432130..2433176 (-) 1047 WP_243603898.1 hypothetical protein -
  MT340_RS12030 (MT340_012030) rpsR 2433412..2433654 (-) 243 WP_002461103.1 30S ribosomal protein S18 -
  MT340_RS12035 (MT340_012035) ssbA 2433702..2434214 (-) 513 WP_103298372.1 single-stranded DNA-binding protein Machinery gene
  MT340_RS12040 (MT340_012040) rpsF 2434236..2434532 (-) 297 WP_002461101.1 30S ribosomal protein S6 -
  MT340_RS12045 (MT340_012045) - 2434820..2435626 (+) 807 WP_243590146.1 glycoside hydrolase family 25 protein -
  MT340_RS12050 (MT340_012050) - 2435694..2435885 (+) 192 WP_011276869.1 hypothetical protein -
  MT340_RS12055 (MT340_012055) ychF 2436001..2437098 (-) 1098 WP_243590147.1 redox-regulated ATPase YchF -
  MT340_RS12060 (MT340_012060) - 2437110..2437313 (-) 204 WP_243590148.1 DUF951 domain-containing protein -
  MT340_RS12065 (MT340_012065) - 2437334..2438215 (-) 882 WP_243603899.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18851.41 Da        Isoelectric Point: 4.7306

>NTDB_id=798502 MT340_RS12035 WP_103298372.1 2433702..2434214(-) (ssbA) [Staphylococcus sp. NRL 16/872]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNQSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=798502 MT340_RS12035 WP_103298372.1 2433702..2434214(-) (ssbA) [Staphylococcus sp. NRL 16/872]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAATGTTGTTGTGT
TTAGAAGACAAGCAGAGAACGTGAATAATTATTTATTCAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACGTCTTATAATAACAATCAATCATCAAACAATAAACAATCAGATAATCCTTTTGCGAACGCAAATGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376