Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MT340_RS08015 Genome accession   NZ_CP119327
Coordinates   1609115..1609978 (-) Length   287 a.a.
NCBI ID   WP_243589500.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1604115..1614978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS08000 (MT340_008000) xerC 1604475..1605368 (-) 894 WP_243603737.1 tyrosine recombinase XerC -
  MT340_RS08005 (MT340_008005) trmFO 1605514..1606821 (-) 1308 WP_243603738.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MT340_RS08010 (MT340_008010) topA 1606842..1608914 (-) 2073 WP_243603739.1 type I DNA topoisomerase -
  MT340_RS08015 (MT340_008015) dprA 1609115..1609978 (-) 864 WP_243589500.1 DNA-processing protein DprA Machinery gene
  MT340_RS08020 (MT340_008020) sucD 1610225..1611130 (-) 906 WP_243589501.1 succinate--CoA ligase subunit alpha -
  MT340_RS08025 (MT340_008025) sucC 1611152..1612318 (-) 1167 WP_103297856.1 ADP-forming succinate--CoA ligase subunit beta -
  MT340_RS08030 (MT340_008030) - 1612429..1613196 (-) 768 WP_243603740.1 ribonuclease HII -
  MT340_RS08035 (MT340_008035) ylqF 1613180..1614064 (-) 885 WP_243603741.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32628.49 Da        Isoelectric Point: 8.7409

>NTDB_id=798495 MT340_RS08015 WP_243589500.1 1609115..1609978(-) (dprA) [Staphylococcus sp. NRL 16/872]
MSDNEIVLLKLRWAGYSTQQIHHLLNLYPDYLSFSFRDQVDTLRTWEKLYSKKELVDRFIKININEITEQLSCHHVSFIS
SFNASYSPLLKQIYDYPLIIFYKGNVNLLSSTNTLGVVGSRVATQYSSHAMQYLFSNFTHIPLTIVSGLAKGADSLAHHY
ALKFNLPTIAVLGHGHLKHYPKETEKLRYIIEEKGLVISEYPPFINIARYHFPQRNRLISGLSKGVLITEAGIKSGSQIT
IDCAIEQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAQDILNDY

Nucleotide


Download         Length: 864 bp        

>NTDB_id=798495 MT340_RS08015 WP_243589500.1 1609115..1609978(-) (dprA) [Staphylococcus sp. NRL 16/872]
ATGTCAGACAACGAAATAGTTTTATTGAAACTTAGATGGGCTGGGTATTCAACACAACAGATTCATCATTTATTAAACTT
GTACCCTGATTATTTAAGTTTTTCATTCAGAGATCAAGTAGATACCTTAAGAACTTGGGAAAAGCTTTACAGTAAAAAAG
AACTTGTAGATCGATTTATTAAAATTAACATCAACGAAATAACAGAACAATTATCATGCCATCATGTGAGTTTTATTTCT
TCATTTAATGCTTCGTATTCACCGCTTCTCAAGCAAATTTATGATTATCCATTGATTATATTTTATAAAGGAAATGTCAA
TTTACTCTCTTCTACCAATACTTTAGGCGTTGTAGGCTCACGTGTCGCTACTCAATATTCCTCTCATGCCATGCAATATC
TCTTCTCAAACTTCACTCATATACCTCTTACTATTGTTTCAGGACTAGCTAAAGGTGCAGATAGTTTAGCACACCATTAC
GCATTAAAATTCAATTTACCTACTATTGCAGTTTTAGGTCATGGTCATTTAAAACACTATCCCAAAGAAACTGAAAAACT
ACGATATATAATTGAAGAAAAAGGATTAGTTATTAGTGAATATCCACCATTTATAAATATTGCAAGGTATCACTTTCCAC
AACGTAATCGTCTAATTAGTGGTTTATCAAAAGGGGTTCTAATTACTGAAGCAGGTATTAAAAGCGGTAGTCAAATTACG
ATAGACTGTGCGATTGAACAAAATAGAAATGTATATGTATTACCAGGCTCTATGTTTAACCCATTAACAAAAGGAAACTT
GTTAAGAGCTCAAGAAGGAGCAATGATAGTTTCAGAAGCACAAGATATATTGAATGATTATTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

55.594

99.652

0.554
  dprA Staphylococcus aureus N315

55.594

99.652

0.554
  dprA Lactococcus lactis subsp. cremoris KW2

36.879

98.258

0.362