Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MT340_RS06690 Genome accession   NZ_CP119327
Coordinates   1329951..1330925 (+) Length   324 a.a.
NCBI ID   WP_243589275.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324951..1335925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS06655 (MT340_006655) rpmG 1325435..1325584 (+) 150 WP_103298552.1 50S ribosomal protein L33 -
  MT340_RS06660 (MT340_006660) - 1325770..1326306 (+) 537 WP_243589270.1 5-formyltetrahydrofolate cyclo-ligase -
  MT340_RS06665 (MT340_006665) - 1326321..1327781 (+) 1461 WP_243589271.1 rhomboid family intramembrane serine protease -
  MT340_RS06670 (MT340_006670) - 1327762..1327965 (+) 204 WP_243589272.1 YqgQ family protein -
  MT340_RS06675 (MT340_006675) - 1327962..1328948 (+) 987 WP_243589273.1 ROK family glucokinase -
  MT340_RS06680 (MT340_006680) - 1328948..1329271 (+) 324 WP_103298547.1 MTH1187 family thiamine-binding protein -
  MT340_RS06685 (MT340_006685) - 1329273..1329899 (+) 627 WP_243589274.1 MBL fold metallo-hydrolase -
  MT340_RS06690 (MT340_006690) comGA 1329951..1330925 (+) 975 WP_243589275.1 competence type IV pilus ATPase ComGA Machinery gene
  MT340_RS06695 (MT340_006695) comGB 1330897..1331961 (+) 1065 WP_243589276.1 competence type IV pilus assembly protein ComGB Machinery gene
  MT340_RS06700 (MT340_006700) comGC 1331977..1332297 (+) 321 WP_243589277.1 competence type IV pilus major pilin ComGC Machinery gene
  MT340_RS06705 (MT340_006705) comGD 1332278..1332724 (+) 447 WP_243589278.1 competence type IV pilus minor pilin ComGD -
  MT340_RS06710 (MT340_006710) - 1332711..1333004 (+) 294 WP_243589279.1 hypothetical protein -
  MT340_RS06715 (MT340_006715) - 1332991..1333419 (+) 429 WP_243603697.1 hypothetical protein -
  MT340_RS06720 (MT340_006720) - 1333578..1334096 (+) 519 WP_243590248.1 shikimate kinase -
  MT340_RS06725 (MT340_006725) gcvT 1334305..1335396 (+) 1092 WP_103299024.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37051.18 Da        Isoelectric Point: 8.8042

>NTDB_id=798488 MT340_RS06690 WP_243589275.1 1329951..1330925(+) (comGA) [Staphylococcus sp. NRL 16/872]
MKLLFKEIVNKAISKNASDIHFIPAEDEVYIKFRVNDNLELYDTFKLDIYQKLLVYMKFQAGLDVSTQQLAQSGRYTYQA
KSLYYLRISTLPLSLGTESCVIRIIPQYFQSKKEYKDFKDFKHLMNKKQGLILFTGPTGSGKSTLMYQMVLYAYEKLNLN
VITIENPVEQLLKGITQVSINKKAGIDYINSFKAILRCDPDVILIGEIRDAEVAKCVIQASLSGHLVLSTMHSSNCKGAL
LRLLEMGISIQEISQAVNLISNQRLITTLSNQRQLVCELINNNQIQYFFEHNNTLPKNFNNLKDKLLMLSKEGTICEEIA
DKYL

Nucleotide


Download         Length: 975 bp        

>NTDB_id=798488 MT340_RS06690 WP_243589275.1 1329951..1330925(+) (comGA) [Staphylococcus sp. NRL 16/872]
TTGAAATTATTATTTAAAGAAATTGTAAACAAGGCTATTAGTAAAAACGCAAGTGATATTCATTTTATTCCAGCTGAAGA
TGAGGTATATATAAAATTTAGAGTGAATGATAATCTTGAATTATATGATACTTTCAAATTAGATATTTATCAGAAATTAT
TAGTGTATATGAAATTTCAAGCTGGGTTAGATGTATCAACTCAACAACTTGCTCAAAGTGGTCGGTATACCTATCAAGCG
AAAAGTTTATATTATTTAAGAATTTCTACGTTACCTTTATCACTAGGCACAGAAAGTTGTGTGATACGAATCATTCCTCA
ATATTTCCAATCAAAAAAAGAATATAAAGATTTTAAAGATTTCAAACATTTAATGAATAAAAAACAGGGTCTCATTTTAT
TCACTGGACCTACAGGGTCTGGAAAAAGTACATTAATGTATCAAATGGTTTTATATGCATATGAAAAACTTAATTTAAAT
GTGATTACGATTGAAAATCCGGTTGAACAATTACTTAAAGGCATTACTCAAGTTTCGATTAATAAAAAAGCTGGCATAGA
TTATATTAACTCGTTTAAAGCCATTTTAAGATGTGACCCAGACGTAATTTTGATAGGAGAAATAAGAGATGCCGAAGTTG
CAAAATGTGTAATTCAAGCTAGTTTGAGTGGTCATTTAGTATTATCGACGATGCATTCAAGCAATTGTAAAGGTGCATTA
CTTCGCTTATTAGAAATGGGAATCAGTATTCAAGAAATTTCACAAGCTGTGAATTTAATATCCAATCAACGGTTAATAAC
TACTTTGTCTAATCAAAGACAACTTGTTTGCGAATTGATAAATAATAATCAAATACAATACTTTTTTGAACATAATAATA
CGTTGCCTAAAAACTTTAATAATTTAAAGGATAAATTATTAATGCTATCGAAAGAGGGAACTATATGTGAAGAAATTGCA
GATAAATATTTATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

70.062

100

0.701
  comGA Staphylococcus aureus N315

70.062

100

0.701