Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MT340_RS06695 Genome accession   NZ_CP119327
Coordinates   1330897..1331961 (+) Length   354 a.a.
NCBI ID   WP_243589276.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1325897..1336961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS06665 (MT340_006665) - 1326321..1327781 (+) 1461 WP_243589271.1 rhomboid family intramembrane serine protease -
  MT340_RS06670 (MT340_006670) - 1327762..1327965 (+) 204 WP_243589272.1 YqgQ family protein -
  MT340_RS06675 (MT340_006675) - 1327962..1328948 (+) 987 WP_243589273.1 ROK family glucokinase -
  MT340_RS06680 (MT340_006680) - 1328948..1329271 (+) 324 WP_103298547.1 MTH1187 family thiamine-binding protein -
  MT340_RS06685 (MT340_006685) - 1329273..1329899 (+) 627 WP_243589274.1 MBL fold metallo-hydrolase -
  MT340_RS06690 (MT340_006690) comGA 1329951..1330925 (+) 975 WP_243589275.1 competence type IV pilus ATPase ComGA Machinery gene
  MT340_RS06695 (MT340_006695) comGB 1330897..1331961 (+) 1065 WP_243589276.1 competence type IV pilus assembly protein ComGB Machinery gene
  MT340_RS06700 (MT340_006700) comGC 1331977..1332297 (+) 321 WP_243589277.1 competence type IV pilus major pilin ComGC Machinery gene
  MT340_RS06705 (MT340_006705) comGD 1332278..1332724 (+) 447 WP_243589278.1 competence type IV pilus minor pilin ComGD -
  MT340_RS06710 (MT340_006710) - 1332711..1333004 (+) 294 WP_243589279.1 hypothetical protein -
  MT340_RS06715 (MT340_006715) - 1332991..1333419 (+) 429 WP_243603697.1 hypothetical protein -
  MT340_RS06720 (MT340_006720) - 1333578..1334096 (+) 519 WP_243590248.1 shikimate kinase -
  MT340_RS06725 (MT340_006725) gcvT 1334305..1335396 (+) 1092 WP_103299024.1 glycine cleavage system aminomethyltransferase GcvT -
  MT340_RS06730 (MT340_006730) gcvPA 1335413..1336765 (+) 1353 WP_243589281.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 41153.20 Da        Isoelectric Point: 10.0022

>NTDB_id=798489 MT340_RS06695 WP_243589276.1 1330897..1331961(+) (comGB) [Staphylococcus sp. NRL 16/872]
MKKLQINIYREKKKNLNSSQQIMLLENLNSLLKSGFTLFECFNFINLYFKYSDRTLSNRIIEGIKNGMACDEVLNLIGYP
QSIITQIYFAQKFGNIEEALDEAINYLKTNLNAKQQILKSIQYPLILIVIFIGMITILNYTVLPQFEQLYATMNVNLTFF
QKLLTQIIATLPTFILIITNLFIVLFIIVLIIQAKMDIAKKVKFLIQIPIFKGYYKLFKTYQIASELSLFYKNGITLQNI
VSIYINQKNNLFLNYLGEILLQNSNNGISLAKSLSEQKCFQEDLIKFIQQGEKSGKLDVELKLYSQILIQRIKNKALKHS
KIIQPVVFLFLGFFIISLYLVIMLPMFQLMQNIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=798489 MT340_RS06695 WP_243589276.1 1330897..1331961(+) (comGB) [Staphylococcus sp. NRL 16/872]
GTGAAGAAATTGCAGATAAATATTTATAGAGAAAAGAAGAAAAATTTGAACTCTAGTCAACAAATTATGTTACTTGAAAA
TTTAAATAGTTTATTAAAAAGTGGTTTCACCTTATTTGAATGTTTCAATTTTATAAACTTATATTTTAAATATAGTGATA
GAACTTTAAGCAATAGGATTATTGAAGGTATCAAAAACGGGATGGCATGTGATGAGGTATTAAATCTAATTGGCTATCCT
CAATCAATCATTACACAAATATATTTCGCCCAAAAATTTGGGAACATAGAAGAAGCTCTCGACGAAGCTATTAATTATTT
AAAAACAAACTTAAATGCTAAACAACAAATATTAAAATCTATACAATATCCGTTAATTTTAATAGTTATCTTTATTGGCA
TGATAACTATATTAAACTATACTGTGCTCCCTCAGTTTGAACAACTTTACGCTACGATGAATGTGAATCTTACCTTTTTC
CAAAAACTTCTTACACAAATTATTGCTACTTTGCCTACTTTTATATTGATTATCACAAATCTTTTCATTGTCCTTTTCAT
AATTGTACTCATTATACAAGCTAAGATGGACATTGCTAAAAAAGTTAAATTTTTAATTCAAATACCGATTTTTAAAGGTT
ATTACAAATTATTTAAAACATATCAAATTGCAAGTGAACTTTCATTATTTTATAAAAATGGAATTACCTTACAAAATATC
GTATCTATATATATTAATCAAAAAAATAATCTTTTTTTAAATTATTTAGGTGAAATTCTATTACAAAATTCGAATAATGG
AATAAGCTTAGCTAAGAGTTTAAGTGAACAAAAATGCTTTCAAGAAGATTTAATTAAATTCATACAACAAGGAGAAAAAA
GTGGAAAATTAGATGTTGAACTTAAATTATATAGTCAAATATTAATCCAAAGAATTAAAAATAAAGCTTTAAAACATTCT
AAGATTATTCAACCAGTTGTCTTTTTATTTTTAGGATTTTTCATTATCAGTTTATATTTAGTTATCATGCTTCCCATGTT
TCAACTTATGCAAAATATTAAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(226-345)

Type II secretion system (T2SS), protein F (T2SSF)

(25-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

50

100

0.503
  comGB Staphylococcus aureus N315

50

100

0.503