Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   P0Y47_RS08475 Genome accession   NZ_CP119319
Coordinates   1833388..1833996 (-) Length   202 a.a.
NCBI ID   WP_279216975.1    Uniprot ID   -
Organism   MAG: Kluyvera intermedia isolate MAG 4159     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828388..1838996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0Y47_RS08460 (P0Y47_08460) helD 1828609..1830663 (-) 2055 WP_279216974.1 DNA helicase IV -
  P0Y47_RS08465 (P0Y47_08465) - 1830786..1831232 (+) 447 WP_062777495.1 YccF domain-containing protein -
  P0Y47_RS08470 (P0Y47_08470) yccS 1831252..1833378 (+) 2127 WP_062777496.1 YccS family putative transporter -
  P0Y47_RS08475 (P0Y47_08475) sxy/tfoX 1833388..1833996 (-) 609 WP_279216975.1 TfoX/Sxy family DNA transformation protein Regulator
  P0Y47_RS08480 (P0Y47_08480) sulA 1834215..1834724 (+) 510 WP_153744059.1 SOS-induced cell division inhibitor SulA -
  P0Y47_RS08485 (P0Y47_08485) ompA 1835079..1836134 (+) 1056 WP_062777502.1 porin OmpA -
  P0Y47_RS08490 (P0Y47_08490) matP 1836222..1836677 (-) 456 WP_062777504.1 macrodomain Ter protein MatP -
  P0Y47_RS08495 (P0Y47_08495) - 1836862..1838622 (+) 1761 WP_279216976.1 Lon protease family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23317.23 Da        Isoelectric Point: 10.4580

>NTDB_id=798426 P0Y47_RS08475 WP_279216975.1 1833388..1833996(-) (sxy/tfoX) [MAG: Kluyvera intermedia isolate MAG 4159]
MKVISYKRIYQSQEYFAVLGKVRSRALFGGYSLAVDDTVFAMVAEGELYLRMCEKTAIYQTQHSPPLLMLRKRGSSLQLK
YFKVDDALWANKPVLLQLGLFSLEDARREKSHQKHPQRLKDLPNLSFHMELLLHEAGVKDVRALQQMGAKTVWLLLRQKR
KQISSNVLYSLEGAIQGVHAAALPALKRQELEEWVRNRTHKN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=798426 P0Y47_RS08475 WP_279216975.1 1833388..1833996(-) (sxy/tfoX) [MAG: Kluyvera intermedia isolate MAG 4159]
ATGAAGGTAATATCATATAAACGGATTTATCAATCCCAGGAATATTTTGCGGTGTTAGGAAAAGTCAGGTCACGAGCGCT
GTTTGGTGGTTACAGCCTTGCCGTTGACGACACGGTTTTCGCAATGGTTGCGGAGGGGGAGCTGTATTTGAGGATGTGCG
AAAAAACCGCCATTTATCAGACTCAGCACTCGCCGCCATTATTGATGTTACGTAAACGAGGAAGCTCGCTTCAGCTTAAG
TATTTCAAAGTAGATGATGCTCTCTGGGCCAACAAACCTGTTTTATTGCAACTGGGGCTGTTTTCACTAGAGGATGCGCG
ACGTGAAAAGTCCCATCAAAAGCATCCGCAGCGATTAAAAGATTTACCCAATCTCTCTTTTCATATGGAATTGTTGTTGC
ATGAAGCGGGTGTTAAGGATGTCCGGGCGTTGCAACAAATGGGGGCGAAAACGGTGTGGTTGCTTCTTCGTCAAAAACGT
AAACAGATAAGTTCCAATGTCCTTTACTCATTGGAGGGAGCCATTCAGGGTGTGCATGCTGCTGCACTCCCGGCGCTAAA
GCGTCAGGAGCTGGAAGAGTGGGTGCGCAATCGCACCCACAAGAACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.726

99.505

0.545