Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PY372_RS13950 Genome accession   NZ_CP119301
Coordinates   2969698..2970342 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain LC     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2964698..2975342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS13935 (PY372_14105) - 2965182..2966627 (-) 1446 WP_015297339.1 hypothetical protein -
  PY372_RS13940 (PY372_14110) csrD 2966639..2968648 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  PY372_RS13945 (PY372_14115) ssb 2968889..2969419 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  PY372_RS13950 (PY372_14120) qstR 2969698..2970342 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  PY372_RS13955 (PY372_14125) galU 2970600..2971472 (+) 873 WP_323709924.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PY372_RS13960 (PY372_14130) uvrA 2971610..2974432 (+) 2823 WP_029833633.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=798405 PY372_RS13950 WP_005480993.1 2969698..2970342(+) (qstR) [Vibrio parahaemolyticus strain LC]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=798405 PY372_RS13950 WP_005480993.1 2969698..2970342(+) (qstR) [Vibrio parahaemolyticus strain LC]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523