Detailed information NTG0798398

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PY372_RS12900
• Genome accession: NZ_CP119301
• Coordinates: 2770935..2771804 (+)
• Length: 289 a.a.
• NCBI ID: WP_025552578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LC
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2765935..2776804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY372_RS12880 (PY372_13055)	nadC	2766384..2767271 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PY372_RS12885 (PY372_13060)	pilA	2767534..2767938 (+)	405	WP_015297250.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
PY372_RS12890 (PY372_13065)	pilB	2767938..2769623 (+)	1686	WP_053339791.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PY372_RS12895 (PY372_13070)	pilC	2769647..2770870 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
PY372_RS12900 (PY372_13075)	pilD	2770935..2771804 (+)	870	WP_025552578.1	prepilin peptidase	Machinery gene
PY372_RS12905 (PY372_13080)	coaE	2771805..2772419 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
PY372_RS12910 (PY372_13085)	zapD	2772447..2773187 (+)	741	WP_005480890.1	cell division protein ZapD	-
PY372_RS12915 (PY372_13090)	yacG	2773256..2773450 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
PY372_RS12920 (PY372_13095)	rplS	2773801..2774154 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
PY372_RS12925 (PY372_13100)	trmD	2774196..2774939 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PY372_RS12930 (PY372_13105)	rimM	2774967..2775515 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
PY372_RS12935 (PY372_13110)	rpsP	2775544..2775792 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32343.42 Da
• Isoelectric Point: 7.1971

>NTDB_id=798398 PY372_RS12900 WP_025552578.1 2770935..2771804(+) (pilD) [Vibrio parahaemolyticus strain LC]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=798398 PY372_RS12900 WP_025552578.1 2770935..2771804(+) (pilD) [Vibrio parahaemolyticus strain LC]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45