Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PZY29_RS16810 Genome accession   NZ_CP119296
Coordinates   3616914..3617438 (-) Length   174 a.a.
NCBI ID   WP_005232920.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain ASE2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3611914..3622438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZY29_RS16790 (PZY29_16790) dnaB 3613019..3614389 (-) 1371 WP_005226374.1 replicative DNA helicase -
  PZY29_RS16795 (PZY29_16795) rplI 3614498..3614950 (-) 453 WP_005226371.1 50S ribosomal protein L9 -
  PZY29_RS16800 (PZY29_16800) - 3614966..3616414 (-) 1449 WP_016611674.1 DHH family phosphoesterase -
  PZY29_RS16805 (PZY29_16805) rpsR 3616654..3616890 (-) 237 WP_005226367.1 30S ribosomal protein S18 -
  PZY29_RS16810 (PZY29_16810) ssb 3616914..3617438 (-) 525 WP_005232920.1 single-stranded DNA-binding protein Machinery gene
  PZY29_RS16815 (PZY29_16815) rpsF 3617482..3617781 (-) 300 WP_005226363.1 30S ribosomal protein S6 -
  PZY29_RS16820 (PZY29_16820) gyrA 3618044..3620569 (-) 2526 WP_008376777.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19122.62 Da        Isoelectric Point: 4.7093

>NTDB_id=798268 PZY29_RS16810 WP_005232920.1 3616914..3617438(-) (ssb) [Enterococcus casseliflavus strain ASE2]
MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSSNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPF
GNSSIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=798268 PZY29_RS16810 WP_005232920.1 3616914..3617438(-) (ssb) [Enterococcus casseliflavus strain ASE2]
TTGATTAATAATGTTGTACTAGTAGGAAGACTAACCAAAGATCCTGATTTACGTTACACTTCTAATGGCACTGGTGTCGC
AACCTTTACCTTGGCGGTAAATCGCAATTTTACCAACCAAAGTGGAGAGCGCGAAGCTGATTTCATCAACTGTGTTATTT
GGAGAAAACCAGCGGAAACATTAGCAAACTATGCACGCAAAGGAACTTTATTAGGGGTTACTGGACGTATTCAAACCCGT
TCATACGACAACCAACAAGGCCAACGTGTTTATGTAACAGAAGTCGTTGCTGACAACTTCCAATTATTAGAATCGCGAAA
TGCTTCCGAGCAAAGACGCACAACTGATAGCGGATCTGGCAGCAGCAATACGTATAACTCAAATAGTTCTTCTGGATTTG
GTAACAATAACTCAAATCAAACTCAATCCTCTCAACCATCAGGAATGCCTAATTTTGATCGAGACAACTCCGATCCATTC
GGAAACTCATCAATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.364

100

0.621
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.866

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385