Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PY247_RS14450 Genome accession   NZ_CP119223
Coordinates   2997509..2998216 (-) Length   235 a.a.
NCBI ID   WP_004654102.1    Uniprot ID   N9PJZ4
Organism   Acinetobacter proteolyticus strain AP54     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2992509..3003216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS14430 (PY247_14430) - 2993067..2993891 (+) 825 WP_004654111.1 SDR family NAD(P)-dependent oxidoreductase -
  PY247_RS14435 (PY247_14435) - 2993986..2995505 (+) 1520 Protein_2810 NAD(P)/FAD-dependent oxidoreductase -
  PY247_RS14440 (PY247_14440) - 2995601..2996479 (+) 879 WP_275572915.1 class I SAM-dependent methyltransferase -
  PY247_RS14445 (PY247_14445) - 2996540..2997316 (-) 777 WP_070075168.1 M48 family metallopeptidase -
  PY247_RS14450 (PY247_14450) crp 2997509..2998216 (-) 708 WP_004654102.1 cAMP-activated global transcriptional regulator CRP Regulator
  PY247_RS14455 (PY247_14455) - 2998365..2998787 (+) 423 WP_101235819.1 OsmC family protein -
  PY247_RS14460 (PY247_14460) - 2998860..2999660 (-) 801 WP_275572916.1 peptidoglycan DD-metalloendopeptidase family protein -
  PY247_RS14465 (PY247_14465) clpB 2999924..3002503 (+) 2580 WP_159724525.1 ATP-dependent chaperone ClpB -
  PY247_RS14470 (PY247_14470) - 3002670..3003110 (+) 441 WP_004654095.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26571.16 Da        Isoelectric Point: 4.7426

>NTDB_id=798225 PY247_RS14450 WP_004654102.1 2997509..2998216(-) (crp) [Acinetobacter proteolyticus strain AP54]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFSEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=798225 PY247_RS14450 WP_004654102.1 2997509..2998216(-) (crp) [Acinetobacter proteolyticus strain AP54]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTGTCTCCAGGTCAACTACCTGAATCAGTTAAAGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATTTTACGCGAAGACGACGAGCGAGAAATCGTTGTTGCCTACTTAAACCCAGGTGATTTC
TTTGGCGAAATGGGGCTTTTTGAAAAGAACCCTCAACGTACCGCAGAAGTACGCACTCGTGATGTCTGTGAAATTGCAGA
AATTTCGTATGACAATTTCCATGAGTTAAGCAAACAATACCCAGATTTAAGTTACGCTGTGTTTGCTCAACTGGTTCGTC
GTCTGAAAAACACAACACGTAAAGTCACTGATCTGGCCTTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCGGCTCAGCCAGAGGCAATGATTTTACCAAATGGCCGTCAGATTCGTATTACACGCCAAGAAATTGGTCGTATCGT
GGGTTGTTCTCGTGAAATGGTGGGACGTGTCCTCAAAACACTTGAAGATCAAGGTATGATTCAAACTGATGGTAAAGCAA
TCTTAATTTTTGATGCTTCTTTAGAGGAAAATACTTTTTCTGAAGATGAGTATGATGACGAGGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9PJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.468

100

0.945
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409