Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RBI11_RS17945 Genome accession   NZ_CP133052
Coordinates   3795712..3796347 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3790712..3801347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS17920 (RBI11_17955) - 3790768..3791748 (-) 981 WP_057092777.1 DNA polymerase III subunit delta' -
  RBI11_RS17925 (RBI11_17960) kdsB 3791760..3792521 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBI11_RS17930 (RBI11_17965) lpxK 3792531..3793541 (-) 1011 WP_000050450.1 tetraacyldisaccharide 4'-kinase -
  RBI11_RS17935 (RBI11_17970) msbA 3793544..3795271 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  RBI11_RS17940 (RBI11_17975) - 3795268..3795696 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  RBI11_RS17945 (RBI11_17980) exbB 3795712..3796347 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RBI11_RS17950 (RBI11_17985) - 3796397..3797284 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RBI11_RS17955 (RBI11_17990) - 3797281..3798063 (-) 783 WP_000057212.1 ParA family protein -
  RBI11_RS17960 (RBI11_17995) rsmG 3798085..3798717 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RBI11_RS17965 (RBI11_18000) murU 3798805..3799494 (-) 690 WP_057092774.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RBI11_RS17970 (RBI11_18005) - 3799494..3800507 (-) 1014 WP_057092772.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=798068 RBI11_RS17945 WP_000264035.1 3795712..3796347(-) (exbB) [Acinetobacter baumannii strain A1014]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=798068 RBI11_RS17945 WP_000264035.1 3795712..3796347(-) (exbB) [Acinetobacter baumannii strain A1014]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393