Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PY824_RS09570 Genome accession   NZ_CP119172
Coordinates   1832059..1832559 (-) Length   166 a.a.
NCBI ID   WP_014295231.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1833205..1838475 1832059..1832559 flank 646


Gene organization within MGE regions


Location: 1832059..1838475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS09570 (PY824_09570) ssb 1832059..1832559 (-) 501 WP_014295231.1 single-stranded DNA-binding protein Machinery gene
  PY824_RS09575 (PY824_09575) rpsF 1832571..1832861 (-) 291 WP_009854900.1 30S ribosomal protein S6 -
  PY824_RS09580 (PY824_09580) - 1833205..1834461 (+) 1257 WP_115265893.1 ISL3 family transposase -
  PY824_RS09585 (PY824_09585) - 1834509..1834673 (-) 165 WP_014295232.1 hypothetical protein -
  PY824_RS09590 (PY824_09590) - 1835100..1836210 (+) 1111 Protein_1831 IS3 family transposase -
  PY824_RS09595 (PY824_09595) - 1836466..1837467 (-) 1002 WP_014295234.1 glycosyl transferase -
  PY824_RS09600 (PY824_09600) - 1837796..1838475 (+) 680 WP_115265912.1 IS6 family transposase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18383.98 Da        Isoelectric Point: 4.7187

>NTDB_id=798068 PY824_RS09570 WP_014295231.1 1832059..1832559(-) (ssb) [Streptococcus macedonicus strain SGM CIP105683]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADDFQILESRATREGQSGGFNNNNSSFGGSSNGGGFSSQSSQSQTPNFGRDESPFGNSNPMDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=798068 PY824_RS09570 WP_014295231.1 1832059..1832559(-) (ssb) [Streptococcus macedonicus strain SGM CIP105683]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGTGATGCAGAACTCCGTTACACACCATCTAATCAAGCCGTTGC
CACATTTACACTTGCTGTAAACCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTATGTAACAGAGATTGTTGCAGATGATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACGGTGGTGGATTCTCAT
CGCAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAATCCAATGGACATTTCA
GATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.614
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

65.663

0.361