Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PXX05_RS09740 Genome accession   NZ_CP119078
Coordinates   2287052..2287750 (+) Length   232 a.a.
NCBI ID   WP_275088035.1    Uniprot ID   -
Organism   Legionella cardiaca strain H63     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282052..2292750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXX05_RS09720 (PXX05_09720) uvrC 2282367..2284211 (-) 1845 WP_420844581.1 excinuclease ABC subunit UvrC -
  PXX05_RS09725 (PXX05_09725) letA 2284299..2284958 (-) 660 WP_275088033.1 two-component system response regulator LetA Regulator
  PXX05_RS09730 (PXX05_09730) phhA 2285191..2286009 (-) 819 WP_275088034.1 phenylalanine 4-monooxygenase -
  PXX05_RS09735 (PXX05_09735) bioC 2286140..2287012 (-) 873 WP_275090491.1 malonyl-ACP O-methyltransferase BioC -
  PXX05_RS09740 (PXX05_09740) comFC 2287052..2287750 (+) 699 WP_275088035.1 ComF family protein Machinery gene
  PXX05_RS09745 (PXX05_09745) - 2287768..2288838 (-) 1071 WP_275088036.1 M50 family metallopeptidase -
  PXX05_RS09750 (PXX05_09750) - 2288851..2289126 (-) 276 WP_275088037.1 hypothetical protein -
  PXX05_RS09755 (PXX05_09755) hemA 2289486..2290761 (+) 1276 Protein_1932 glutamyl-tRNA reductase -
  PXX05_RS09760 (PXX05_09760) prfA 2290745..2291839 (+) 1095 WP_275088039.1 peptide chain release factor 1 -
  PXX05_RS09765 (PXX05_09765) prmC 2291826..2292674 (+) 849 WP_275088040.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26519.07 Da        Isoelectric Point: 9.2959

>NTDB_id=797548 PXX05_RS09740 WP_275088035.1 2287052..2287750(+) (comFC) [Legionella cardiaca strain H63]
MRHTLASITQMLRLPSVCVICYQYHRDPYAACRACFSLLQQLGPACSYCALPLSDDSFLVCGRCSKSKPAFDRTFTMYRF
EEPLRTLLHEYKYNGALFLRGFLVKLMIDALPQTALKTECLVPVPLHSKKLQERGFNQAAELAKRLAKHLQIPYELTLCK
KILHTPSQMSLNRKERHRNLRHAFEVKANSYQHITLVDDLLTTGNTVNELATLFKKQGVAHVDVWCCARATT

Nucleotide


Download         Length: 699 bp        

>NTDB_id=797548 PXX05_RS09740 WP_275088035.1 2287052..2287750(+) (comFC) [Legionella cardiaca strain H63]
GTGCGTCACACACTGGCCAGTATAACACAAATGTTACGTTTGCCTTCTGTCTGCGTTATTTGTTATCAATATCACCGCGA
TCCTTATGCTGCTTGTCGCGCTTGTTTTTCTCTTTTACAGCAACTTGGCCCAGCTTGTAGCTATTGCGCTCTCCCATTAT
CTGATGACAGTTTTTTAGTCTGTGGTCGCTGCAGCAAAAGCAAACCGGCTTTTGATCGTACATTTACAATGTATCGTTTT
GAAGAACCTCTACGAACTTTATTACATGAATATAAATATAATGGGGCACTTTTTCTTCGTGGCTTCCTGGTGAAATTAAT
GATTGATGCTTTACCTCAAACTGCGCTCAAAACAGAATGCTTGGTCCCTGTACCTCTACATTCTAAAAAACTACAGGAAC
GTGGATTTAATCAGGCTGCAGAACTTGCCAAGCGACTTGCAAAACATTTACAAATTCCTTACGAGCTTACACTTTGCAAG
AAAATTTTACACACGCCCTCACAGATGAGTTTAAACAGGAAAGAACGCCACCGAAACTTACGTCATGCTTTTGAAGTAAA
AGCAAACAGCTACCAACATATTACACTAGTAGATGATTTATTAACTACCGGCAATACCGTCAACGAGTTAGCCACACTTT
TCAAAAAACAAGGAGTTGCTCACGTTGACGTCTGGTGTTGTGCACGTGCGACTACTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

53.017

100

0.53
  comFC Legionella pneumophila strain ERS1305867

54.639

83.621

0.457