Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PZB78_RS20855 Genome accession   NZ_CP119073
Coordinates   4065688..4066638 (+) Length   316 a.a.
NCBI ID   WP_106021021.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4060688..4071638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS20830 (PZB78_20810) rapC 4062077..4063225 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  PZB78_RS20835 (PZB78_20815) phrC 4063209..4063331 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PZB78_RS20840 (PZB78_20820) - 4063436..4063528 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  PZB78_RS20845 (PZB78_20825) - 4063675..4063785 (-) 111 WP_106021023.1 YjcZ family sporulation protein -
  PZB78_RS20850 (PZB78_20830) - 4063938..4065302 (-) 1365 WP_095714086.1 aspartate kinase -
  PZB78_RS20855 (PZB78_20835) ceuB 4065688..4066638 (+) 951 WP_106021021.1 petrobactin ABC transporter permease YclN Machinery gene
  PZB78_RS20860 (PZB78_20840) yclO 4066631..4067578 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  PZB78_RS20865 (PZB78_20845) yclP 4067572..4068330 (+) 759 WP_106021019.1 petrobactin ABC transporter ATP-binding protein YclP -
  PZB78_RS20870 (PZB78_20850) - 4068352..4069305 (+) 954 WP_127695980.1 siderophore ABC transporter substrate-binding protein -
  PZB78_RS20875 (PZB78_20855) - 4069354..4070772 (-) 1419 WP_095714088.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34997.42 Da        Isoelectric Point: 9.8262

>NTDB_id=797525 PZB78_RS20855 WP_106021021.1 4065688..4066638(+) (ceuB) [Bacillus halotolerans strain SW207]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFSSASPLMKMLIAFVFALVGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=797525 PZB78_RS20855 WP_106021021.1 4065688..4066638(+) (ceuB) [Bacillus halotolerans strain SW207]
ATGAAGCTACGTTACTTATTTTTTCTACTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTAA
TCGCGGGCATGAGCATGAGCATCTGCGGGCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTTCATCGGCAAGTCCTTTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTAGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTCTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACATCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCAATTTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538