Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   PZB78_RS20830 Genome accession   NZ_CP119073
Coordinates   4062077..4063225 (+) Length   382 a.a.
NCBI ID   WP_024120212.1    Uniprot ID   A0A7G7UCE4
Organism   Bacillus halotolerans strain SW207     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4057077..4068225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS20810 (PZB78_20790) - 4057451..4058131 (-) 681 WP_103671922.1 ABC transporter ATP-binding protein -
  PZB78_RS20815 (PZB78_20795) - 4058147..4059601 (-) 1455 WP_254518037.1 ABC transporter permease -
  PZB78_RS20820 (PZB78_20800) - 4059814..4060497 (+) 684 WP_254518038.1 response regulator transcription factor -
  PZB78_RS20825 (PZB78_20805) - 4060484..4061908 (+) 1425 WP_286109135.1 HAMP domain-containing sensor histidine kinase -
  PZB78_RS20830 (PZB78_20810) rapC 4062077..4063225 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  PZB78_RS20835 (PZB78_20815) phrC 4063209..4063331 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PZB78_RS20840 (PZB78_20820) - 4063436..4063528 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  PZB78_RS20845 (PZB78_20825) - 4063675..4063785 (-) 111 WP_106021023.1 YjcZ family sporulation protein -
  PZB78_RS20850 (PZB78_20830) - 4063938..4065302 (-) 1365 WP_095714086.1 aspartate kinase -
  PZB78_RS20855 (PZB78_20835) ceuB 4065688..4066638 (+) 951 WP_106021021.1 petrobactin ABC transporter permease YclN Machinery gene
  PZB78_RS20860 (PZB78_20840) yclO 4066631..4067578 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45690.75 Da        Isoelectric Point: 5.2483

>NTDB_id=797523 PZB78_RS20830 WP_024120212.1 4062077..4063225(+) (rapC) [Bacillus halotolerans strain SW207]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVSDHIERAEFYFKIAEAYYYMKQTYF
SLIHIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAFYNLGLCYYNQDLLD
PAIEHFEKAVSTFENSRITNSLPQAYFLITLIYYKRGKHEKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQAQPNTEG
IERCFRYLKNKNMYADIEDLGLEVAKYYYEQKWFELSASYFLRVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=797523 PZB78_RS20830 WP_024120212.1 4062077..4063225(+) (rapC) [Bacillus halotolerans strain SW207]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACCTTCAGCGT
GCCGGATGCCGAGGTGCTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGTTATATT
ACTCACTAATGGAATTTCGCCACCAGCTTATGCTTGATTATCTCGAGCCGCTGGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAATATAGACAGCAACCAAGCTGATCTGAAAGGGCTTCTCGATTATTATGTGAATTTTTT
CCGCGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTACAAACAGGCGGAGAAAAAACTTTCTT
TTGTTTCCGATCATATTGAACGGGCTGAATTTTATTTTAAAATTGCGGAAGCTTATTATTATATGAAGCAAACGTACTTT
TCATTGATTCATATCAAAAATGCATATGAAATTTATGTAGAGCAGGAAACCTATAATGTTCGGATTATCCAATGCCATTT
TGTGTTCGGGGTTAACCTTATGGATGAGAGAAATTTTGAACAAGCCGCACGGCATTTCAAATTGGCGCTGGAGATGGCGG
AAGCGGAACAAAAAGCCCAATTGGTCGGAAGAGCATTTTATAATTTAGGGCTGTGTTATTACAATCAAGACCTCCTCGAC
CCTGCCATTGAACATTTTGAGAAAGCGGTTTCCACTTTTGAAAACAGCAGAATCACCAATTCTCTGCCTCAAGCATATTT
TTTAATAACACTTATTTATTATAAACGCGGAAAACATGAGAAGGCCTCGGAATATCACAAGAGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGATTACGCGGTAAAATTTGAGTTTTTACAATCCCTATATCAGGCACAGCCCAATACAGAAGGA
ATCGAACGATGTTTCCGATATTTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGGCCTAGAAGTAGCAAAATA
TTACTATGAACAAAAATGGTTTGAACTGTCTGCTTCCTACTTTCTTAGAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(224-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UCE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

95.026

100

0.95
  rapF Bacillus subtilis subsp. subtilis str. 168

56.316

99.476

0.56