Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q7C01_RS28405 Genome accession   NZ_CP132975
Coordinates   6463027..6465171 (-) Length   714 a.a.
NCBI ID   WP_266466170.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6458027..6470171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS28385 (Q7C01_28385) - 6458564..6458866 (-) 303 WP_266466178.1 hypothetical protein -
  Q7C01_RS28390 (Q7C01_28390) - 6458997..6459998 (-) 1002 WP_266466176.1 TerC/Alx family metal homeostasis membrane protein -
  Q7C01_RS28395 (Q7C01_28395) - 6460219..6462234 (-) 2016 WP_266466174.1 TerD family protein -
  Q7C01_RS28400 (Q7C01_28400) - 6462309..6462887 (-) 579 WP_266466172.1 TerD family protein -
  Q7C01_RS28405 (Q7C01_28405) uvrB 6463027..6465171 (-) 2145 WP_266466170.1 excinuclease ABC subunit UvrB Machinery gene
  Q7C01_RS28410 (Q7C01_28410) - 6465212..6466078 (-) 867 WP_030852833.1 MHYT domain-containing protein -
  Q7C01_RS28415 (Q7C01_28415) - 6466368..6467240 (+) 873 WP_266466166.1 glycerophosphodiester phosphodiesterase family protein -
  Q7C01_RS28420 (Q7C01_28420) - 6467293..6467847 (+) 555 WP_266466164.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  Q7C01_RS28425 (Q7C01_28425) - 6467861..6468289 (-) 429 WP_266466161.1 VOC family protein -
  Q7C01_RS28430 (Q7C01_28430) - 6468396..6469304 (+) 909 WP_306689531.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80365.08 Da        Isoelectric Point: 4.8374

>NTDB_id=797515 Q7C01_RS28405 WP_266466170.1 6463027..6465171(-) (uvrB) [Streptomyces sp. FXY-T5]
MRPVSKIERTVAPFEVVSPYQPNGDQPTAIADLARRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEIDRDELLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDEHLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYEMSRSDGYVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQIAYNTERGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRKAKKDGGGTKAPVPSLG
KAAGAAKSAKGRGKAEETVPTDRPAAELAGQIEELTARMRAAAAELQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=797515 Q7C01_RS28405 WP_266466170.1 6463027..6465171(-) (uvrB) [Streptomyces sp. FXY-T5]
ATGCGGCCCGTTTCAAAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAACGGCGACCAGCC
GACGGCCATCGCCGACCTCGCCCGGCGTATCGAGGCGGGTGAGAAGGACGTCGTGCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACGCTCGTGATGGCGCCGAACAAGACGCTTGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTGCTTCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGTCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCCGCGTCGGCGAGGAGATCGACCGCGACGAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACCTGGCCTTCACCCGCGGCACCTTCCGCGTGCGCGGCGACACCATTGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTGCACCCGCTCACCGGC
GAGATCATCAGCGACGACGAGCACCTCTACGTCTTCCCGGCCTCCCACTACGTCGCCGGCCCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAAAAGGAGCTGGCCGAGCGCCTCACGGAGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGCC
TGCGCATGCGCACCACGTACGACATCGAGATGCTGCGCCAGATCGGCAGCTGCTCCGGTGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCTCCCCGCCGAACACCCTCCTGGACTACTTCCCGGACGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACGGTCTACCTG
TCGGCCACCCCCGGGAAGTACGAGATGTCCCGCTCGGACGGCTACGTCGAGCAGATCATCCGCCCCACCGGCCTGGTCGA
CCCGGAAGTCGTCGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGGCAGCGCACCGAGAAGGACG
AGCGCGTCCTCGTCACCACACTCACCAAGAAGATGGCGGAGGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGATACCCTGCGTCGTGTCGAACTGCTGCGTGAACTGCGCGCCGGCGAGTACGACGTGCT
GGTCGGCATCAACCTCCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACGTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAATGTGTCCGGACAGGTCCACATGTAC
GCCGACAAGATCACTCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGGCGCCGAGAGAAGCAGATCGCCTACAACAC
GGAACGGGGCATCGACCCCCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCCAGATCGCCCGCGAGGACATCGACA
CCGAGCAACTGCTCGGCTCGGGCTACCGCAAGGCGAAGAAGGACGGCGGGGGCACCAAGGCGCCCGTACCCTCCCTCGGC
AAGGCGGCCGGCGCCGCCAAGTCCGCCAAGGGCAGGGGCAAGGCCGAGGAGACGGTGCCGACCGACCGCCCGGCGGCCGA
ACTGGCCGGGCAGATCGAGGAGCTCACCGCCCGGATGCGGGCGGCCGCCGCGGAGCTCCAGTTCGAGATCGCGGCCCGGT
TGCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(671-703)

Type III restriction enzyme, res subunit (ResIII)

(22-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.143

97.059

0.555
  uvrB Streptococcus pneumoniae R6

57.143

97.059

0.555
  uvrB Streptococcus pneumoniae D39

57.143

97.059

0.555