Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q7C01_RS25855 Genome accession   NZ_CP132975
Coordinates   5923472..5924542 (-) Length   356 a.a.
NCBI ID   WP_266465282.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5918472..5929542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS25835 (Q7C01_25835) - 5919240..5919779 (-) 540 WP_266465273.1 adenine phosphoribosyltransferase -
  Q7C01_RS25840 (Q7C01_25840) secF 5919776..5920891 (-) 1116 WP_266465276.1 protein translocase subunit SecF -
  Q7C01_RS25845 (Q7C01_25845) secD 5920893..5922662 (-) 1770 WP_266465279.1 protein translocase subunit SecD -
  Q7C01_RS25850 (Q7C01_25850) yajC 5922795..5923286 (-) 492 WP_266465280.1 preprotein translocase subunit YajC -
  Q7C01_RS25855 (Q7C01_25855) ruvB 5923472..5924542 (-) 1071 WP_266465282.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q7C01_RS25860 (Q7C01_25860) ruvA 5924588..5925193 (-) 606 WP_266465284.1 Holliday junction branch migration protein RuvA -
  Q7C01_RS25865 (Q7C01_25865) ruvC 5925190..5925729 (-) 540 WP_266465286.1 crossover junction endodeoxyribonuclease RuvC -
  Q7C01_RS25870 (Q7C01_25870) - 5925840..5926592 (-) 753 WP_097215555.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7C01_RS25875 (Q7C01_25875) pdxT 5926641..5927249 (-) 609 WP_266465289.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  Q7C01_RS25880 (Q7C01_25880) pdxS 5927263..5928168 (-) 906 WP_030843057.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  Q7C01_RS25885 (Q7C01_25885) - 5928305..5928847 (-) 543 WP_030843056.1 membrane protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38163.50 Da        Isoelectric Point: 4.6724

>NTDB_id=797510 Q7C01_RS25855 WP_266465282.1 5923472..5924542(-) (ruvB) [Streptomyces sp. FXY-T5]
MNWDDTTDADAAERLVDSVADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSAGLLEVEIDPEGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGLITRDIAAAALAVYEVDPRGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRSQSAGNGQGDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=797510 Q7C01_RS25855 WP_266465282.1 5923472..5924542(-) (ruvB) [Streptomyces sp. FXY-T5]
ATGAACTGGGACGACACGACCGACGCCGACGCCGCGGAGCGGCTGGTCGACTCCGTCGCCGACCGTGAGGACCAGGCCGT
CGAGGCCGCCCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTCGACCTCGTGCTGC
GCGCCGCACGCGCGCGTGGGGCCACCGCCGACCACGTGCTGCTCTCCGGAGCCCCCGGCCTCGGCAAGACCACCCTGTCG
ATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCGGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGC
CATCCTCTCCTCACTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TGTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACGGCCATCCCGCTGGAGCTG
CCCCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGCCTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACAGC
GCACATGGAGTTCTACGAACCGGCCGAACTGGAGCGGGTCATCCACCGCTCGGCCGGCCTCCTCGAAGTCGAGATCGACC
CGGAGGGCGCCGCCGAGATCGCCGGACGCTCCCGCGGCACGCCCCGCATCGCCAACCGCCTGCTGCGCCGCGTCCGCGAC
TACGCGCAGGTCAAGGCCGACGGCCTGATCACCCGGGACATCGCCGCCGCCGCCCTAGCCGTGTACGAGGTGGACCCGCG
CGGCCTCGACCGCCTGGACCGCGGTGTGCTGGAAGCCCTGCTCAAACTGTTCGGCGGCGGTCCGGTCGGCCTCTCCACGC
TCGCTGTCGCGGTGGGGGAGGAGCGTGAGACGGTGGAGGAGGTCGCCGAGCCCTTCCTCGTGCGGGAGGGCCTGCTGGCC
CGGACCCCCCGAGGTCGGGTCGCCACACCCGCCGCATGGGCGCATCTCGGCCTCACCCCGCCCCGCTCCCAGAGCGCCGG
AAACGGACAAGGGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(192-265)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB C-terminal winged helix domain (WHD_RuvB)

(268-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.758

92.697

0.517
  ruvB Synechocystis sp. PCC 6803

54.777

88.202

0.483
  ruvB Streptococcus pneumoniae TIGR4

52.778

91.011

0.48
  ruvB Streptococcus pneumoniae R6

52.778

91.011

0.48
  ruvB Streptococcus pneumoniae D39

52.778

91.011

0.48
  ruvB Helicobacter pylori 26695

50.943

89.326

0.455