Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PZB78_RS16560 Genome accession   NZ_CP119073
Coordinates   3224994..3226139 (+) Length   381 a.a.
NCBI ID   WP_188323349.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3219994..3231139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS16540 (PZB78_16525) - 3220869..3222146 (+) 1278 WP_127696379.1 pitrilysin family protein -
  PZB78_RS16545 (PZB78_16530) - 3222143..3222844 (+) 702 WP_151174591.1 bacteriocin biosynthesis protein AlbG -
  PZB78_RS16550 (PZB78_16535) - 3222851..3223207 (-) 357 Protein_3241 YncE family protein -
  PZB78_RS16555 (PZB78_16540) - 3223407..3224765 (-) 1359 WP_106019735.1 YncE family protein -
  PZB78_RS16560 (PZB78_16545) rapF 3224994..3226139 (+) 1146 WP_188323349.1 tetratricopeptide repeat protein Regulator
  PZB78_RS16565 (PZB78_16550) phrF 3226123..3226242 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PZB78_RS16570 (PZB78_16555) - 3226495..3226974 (+) 480 WP_061572213.1 hypothetical protein -
  PZB78_RS16575 (PZB78_16560) - 3227123..3227911 (+) 789 WP_188323350.1 hypothetical protein -
  PZB78_RS16580 (PZB78_16565) - 3227898..3228572 (+) 675 WP_188323351.1 hypothetical protein -
  PZB78_RS16585 (PZB78_16570) - 3228582..3229379 (+) 798 WP_223203941.1 hypothetical protein -
  PZB78_RS16590 (PZB78_16575) - 3229382..3230029 (+) 648 WP_188323353.1 ABC transporter ATP-binding protein -
  PZB78_RS16595 (PZB78_16580) - 3230022..3230582 (+) 561 WP_188323354.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45678.17 Da        Isoelectric Point: 5.2567

>NTDB_id=797509 PZB78_RS16560 WP_188323349.1 3224994..3226139(+) (rapF) [Bacillus halotolerans strain SW207]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYTMAESEKQPQLMGRTLYNIGLCKNSQEQYES
AITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYLSGPDEEAI
QTFFDFLESKMMYADLEDFALDVAKYYHGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=797509 PZB78_RS16560 WP_188323349.1 3224994..3226139(+) (rapF) [Bacillus halotolerans strain SW207]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
AGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCACGA
CTGTCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATTTTTTCAG
GGGCATGTACGAACTGGACCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTG
TAAAGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCC
ATGGACTATGCACGGCAGGCATATGAAATATATAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGTCATTCTTT
GTTTGCTACCAATTTCTTAGATCTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCTGAAT
CCGAAAAACAGCCCCAATTAATGGGAAGAACGCTGTACAACATTGGGCTTTGCAAAAACAGCCAAGAGCAGTATGAGTCA
GCAATCACATATTTCAAAAGAGCCATATCCGTTTTTGAAGAAGCTAACATTCTTCCTTCTCTGCCACAAGCTTATTTTTT
GATTACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTACTCTAAAG
AGGCCGGAGATATCATATACTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCTGGCCCGGATGAAGAGGCAATT
CAAACATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTA
TCATGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACGAGTAAGACAGCTTATTCAAGGAGGAG
TGAAATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

93.176

100

0.932
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572