Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q7C01_RS01450 Genome accession   NZ_CP132975
Coordinates   315619..316284 (+) Length   221 a.a.
NCBI ID   WP_030846299.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 310619..321284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS01430 (Q7C01_01430) - 310909..312120 (+) 1212 WP_266459541.1 acyltransferase -
  Q7C01_RS01435 (Q7C01_01435) - 312113..313489 (+) 1377 WP_373569186.1 sensor histidine kinase -
  Q7C01_RS01440 (Q7C01_01440) vraR 313486..314169 (+) 684 WP_266459538.1 response regulator transcription factor Regulator
  Q7C01_RS01445 (Q7C01_01445) - 314279..315622 (+) 1344 WP_266459536.1 sensor histidine kinase -
  Q7C01_RS01450 (Q7C01_01450) vraR 315619..316284 (+) 666 WP_030846299.1 response regulator transcription factor Regulator
  Q7C01_RS01455 (Q7C01_01455) - 316361..316738 (-) 378 WP_306687887.1 SH3 domain-containing protein -
  Q7C01_RS01460 (Q7C01_01460) - 316886..318091 (+) 1206 WP_266459526.1 cytochrome P450 -
  Q7C01_RS01465 (Q7C01_01465) - 318116..319714 (-) 1599 WP_306687888.1 ABC transporter permease -
  Q7C01_RS01470 (Q7C01_01470) - 319711..320625 (-) 915 WP_266459520.1 ABC transporter ATP-binding protein -
  Q7C01_RS01475 (Q7C01_01475) - 320700..321203 (+) 504 WP_266459517.1 GbsR/MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23919.70 Da        Isoelectric Point: 4.7508

>NTDB_id=797461 Q7C01_RS01450 WP_030846299.1 315619..316284(+) (vraR) [Streptomyces sp. FXY-T5]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVAKVRELAPDVVLMDIRMPELNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSEKPRLMPSAQAAYGDLTE
RETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=797461 Q7C01_RS01450 WP_030846299.1 315619..316284(+) (vraR) [Streptomyces sp. FXY-T5]
ATGACCATCCGGGTCCTGATCGCGGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTGAACGGCCGGGAGGCCGTCGCCAAAGTCCGCGAGCTCGCCCCGGACGTGGTGCTGA
TGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCGACCCGCGAGATCGTCGCGGCCGACGGCGCGGCGAAGGTGCTG
GTGCTCACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGTGCCTCCGGGTTCCTCCTCAAGGACGC
CTCGGCCCGTCAGCTCGCCGACGGGGTGCGGGTGGTGGCGTCGGGGGAGGCGCTCCTGGCCCCCTCGGTGACCAGGCGCC
TGATCACCGAGTTCTCCAAGCTCTCCGAGAAGCCGCGCCTGATGCCCTCCGCGCAGGCGGCCTACGGGGATCTCACCGAG
CGGGAGACGGAGGTGCTGGTCCTCATCGCGCAGGGCCTGTCGAACTCGGAGATCGCGGAGCGGCTGGTGGTCGCCGAGTC
GACGATCAAGACGCATGTCAGCCGGATCCTGGTGAAACTGGGCCTCAGGGACCGGACGCAGGCGGCGGTGTTCGCCTACG
AGGCGCGGCTGGTGACGCCCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.413

98.643

0.448
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

98.19

0.421