Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   PZB78_RS03765 Genome accession   NZ_CP119073
Coordinates   732295..733446 (+) Length   383 a.a.
NCBI ID   WP_283912910.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 727295..738446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS03735 (PZB78_03720) - 727966..729183 (+) 1218 WP_254518294.1 MFS transporter -
  PZB78_RS03740 (PZB78_03725) - 729350..729928 (+) 579 WP_010333747.1 GNAT family N-acetyltransferase -
  PZB78_RS03745 (PZB78_03730) spx 730108..730503 (+) 396 WP_024120919.1 transcriptional regulator Spx -
  PZB78_RS03750 (PZB78_03735) - 730546..731202 (-) 657 WP_044156385.1 TerC family protein -
  PZB78_RS03755 (PZB78_03740) - 731389..731514 (+) 126 WP_120698858.1 hypothetical protein -
  PZB78_RS03760 (PZB78_03745) mecA 731481..732137 (+) 657 WP_024120921.1 adaptor protein MecA Regulator
  PZB78_RS03765 (PZB78_03750) coiA 732295..733446 (+) 1152 WP_283912910.1 competence protein CoiA family protein Machinery gene
  PZB78_RS03770 (PZB78_03755) pepF 733676..735505 (+) 1830 WP_189269889.1 oligoendopeptidase F -
  PZB78_RS03775 (PZB78_03760) - 735541..735708 (-) 168 WP_024120925.1 hypothetical protein -
  PZB78_RS03780 (PZB78_03765) spxH 736022..736921 (-) 900 WP_024120926.1 protease adaptor protein SpxH -
  PZB78_RS03785 (PZB78_03770) - 736918..737316 (-) 399 WP_010333756.1 thiol management oxidoreductase -
  PZB78_RS03790 (PZB78_03775) - 737573..738304 (-) 732 WP_254518157.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44727.81 Da        Isoelectric Point: 9.8435

>NTDB_id=797460 PZB78_RS03765 WP_283912910.1 732295..733446(+) (coiA) [Bacillus halotolerans strain SW207]
MFSAVTEDGQVFHLIGRQRREQLKQTRFFCPVCAEELDVKLGSQKAPHFAHKQNKSCTIDIEPESAYHLEGKRQLYVWLK
TQKSSPLLEPYVKEIKQRPDILAKVKGDTLAVEYQCATLAPDVFQKRTAGFKQAGMIPQWILGGSRLKRTSSSFYQLSAF
HWQFINASPNSDLLCYCPETHSFLRLSRMIPFYTTHFYCSVQTIPIRQAAAEDLFCTEPDSSFKHSDWTGAILRFRRKTH
RFLSKDMNRIRLLFYEKRQTPLSFLPTEVFVPVKKGAVFKSPVFVWQGYLYLFITDLGYKHAPIRFSAVLQHCKIHIHKK
NILLRGVYRNQDFIEAVKQYIEFLCKKGFLRETQKEVYVLNQPANRSQSLQDLIEKDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=797460 PZB78_RS03765 WP_283912910.1 732295..733446(+) (coiA) [Bacillus halotolerans strain SW207]
TTGTTTAGTGCTGTGACAGAAGACGGCCAAGTGTTTCACCTCATAGGCAGGCAGAGGAGAGAACAATTAAAGCAGACCAG
GTTTTTCTGCCCGGTGTGTGCAGAGGAGCTCGATGTGAAGCTAGGGTCTCAGAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCACGATAGACATAGAACCTGAGAGCGCCTATCACTTAGAAGGAAAACGGCAGCTTTATGTATGGCTGAAA
ACGCAAAAGTCTTCCCCGCTCTTAGAGCCGTACGTGAAAGAGATTAAACAAAGGCCCGACATCTTGGCAAAAGTAAAGGG
GGATACGCTTGCAGTTGAATACCAATGCGCGACTCTCGCTCCAGATGTCTTTCAAAAAAGAACAGCCGGTTTCAAACAAG
CAGGAATGATACCGCAGTGGATTCTTGGAGGCAGCCGCTTAAAACGGACATCATCATCCTTTTACCAGCTGTCCGCTTTC
CATTGGCAGTTTATCAATGCCAGTCCGAACAGCGATCTGTTATGTTACTGCCCCGAAACACATTCTTTCCTGAGGCTCAG
CCGCATGATCCCGTTTTACACAACCCATTTTTACTGCTCCGTCCAAACGATTCCAATCCGCCAGGCAGCGGCTGAAGATT
TATTTTGCACTGAACCAGATTCGTCATTTAAGCACTCAGATTGGACAGGAGCCATTCTCCGTTTTCGCCGCAAAACTCAT
CGCTTTCTCTCTAAAGATATGAATCGGATCAGGCTTCTGTTTTATGAAAAACGGCAAACACCTCTCTCTTTTCTTCCGAC
AGAGGTGTTTGTTCCTGTAAAGAAAGGAGCTGTTTTTAAGAGTCCCGTTTTTGTATGGCAGGGCTATCTTTATCTGTTTA
TTACGGATCTTGGATACAAACATGCGCCTATTCGCTTTTCAGCCGTTTTGCAGCACTGCAAAATACACATTCATAAAAAG
AACATTTTGCTAAGAGGCGTATACAGGAATCAGGATTTCATTGAGGCGGTTAAACAGTACATTGAGTTTTTGTGCAAGAA
GGGATTTTTGAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCCGCAAACCGCAGCCAATCATTACAGGATCTCA
TTGAAAAAGACAGAAGCTGTTTTATCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

75.335

97.389

0.734