Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RBB55_RS13155 Genome accession   NZ_CP132915
Coordinates   2738256..2740277 (-) Length   673 a.a.
NCBI ID   WP_377802789.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2733256..2745277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS13130 (RBB55_13155) - 2733276..2733950 (-) 675 WP_000468065.1 hypothetical protein -
  RBB55_RS13135 (RBB55_13160) - 2733962..2734696 (-) 735 WP_001183838.1 hypothetical protein -
  RBB55_RS13140 (RBB55_13165) - 2734845..2736302 (-) 1458 WP_000031229.1 glyceraldehyde-3-phosphate dehydrogenase -
  RBB55_RS13145 (RBB55_13170) rarD 2736519..2737466 (-) 948 WP_014466252.1 EamA family transporter RarD -
  RBB55_RS13150 (RBB55_13175) - 2737575..2738162 (-) 588 WP_000885644.1 lipocalin family protein -
  RBB55_RS13155 (RBB55_13180) uvrB 2738256..2740277 (-) 2022 WP_377802789.1 excinuclease ABC subunit UvrB Machinery gene
  RBB55_RS13160 (RBB55_13185) - 2740457..2741248 (+) 792 WP_000222202.1 hypothetical protein -
  RBB55_RS13165 (RBB55_13190) - 2741423..2742859 (+) 1437 WP_000448849.1 diguanylate cyclase domain-containing protein -
  RBB55_RS13170 (RBB55_13195) - 2742892..2743071 (-) 180 WP_000139632.1 hypothetical protein -
  RBB55_RS13175 (RBB55_13200) - 2743279..2744508 (+) 1230 WP_377802791.1 pyridoxal phosphate-dependent aminotransferase -
  RBB55_RS13180 (RBB55_13205) - 2744731..2745237 (+) 507 WP_377802792.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77277.98 Da        Isoelectric Point: 5.2638

>NTDB_id=797325 RBB55_RS13155 WP_377802789.1 2738256..2740277(-) (uvrB) [Acinetobacter baumannii strain A207]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLNFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALTADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=797325 RBB55_RS13155 WP_377802789.1 2738256..2740277(-) (uvrB) [Acinetobacter baumannii strain A207]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGTCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCGTC
AGATACATTTATTGAAAAAGATGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTGACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGCGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAATTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGGTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACCTTATTTGACTATGTACCTGAAGATGCCTTACTTATTATTGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACGGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCGGTGCTTACCCAAGTCGATGATGTTCTGTCTGAGATTAATATTCGTAAGAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGTGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCCTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACAATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTACCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577