Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PYU99_RS18755 Genome accession   NZ_CP118993
Coordinates   4089796..4090668 (+) Length   290 a.a.
NCBI ID   WP_042649027.1    Uniprot ID   -
Organism   Aeromonas media strain K521     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4084796..4095668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYU99_RS18735 (PYU99_18735) nadC 4084985..4085848 (+) 864 WP_270824598.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PYU99_RS21780 - 4086173..4086634 (+) 462 WP_082030008.1 pilin -
  PYU99_RS18745 (PYU99_18745) pilB 4086638..4088344 (+) 1707 WP_042649025.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  PYU99_RS18750 (PYU99_18750) pilC 4088474..4089715 (+) 1242 WP_042649026.1 type II secretion system F family protein Machinery gene
  PYU99_RS18755 (PYU99_18755) pilD 4089796..4090668 (+) 873 WP_042649027.1 prepilin peptidase Machinery gene
  PYU99_RS18760 (PYU99_18760) coaE 4090687..4091301 (+) 615 WP_042649028.1 dephospho-CoA kinase -
  PYU99_RS18765 (PYU99_18765) zapD 4091339..4092061 (+) 723 WP_042649029.1 cell division protein ZapD -
  PYU99_RS18770 (PYU99_18770) yacG 4092071..4092265 (+) 195 WP_042649030.1 DNA gyrase inhibitor YacG -
  PYU99_RS18775 (PYU99_18775) mutT 4092341..4092745 (-) 405 WP_005332118.1 8-oxo-dGTP diphosphatase MutT -
  PYU99_RS18780 (PYU99_18780) secA 4092901..4095621 (-) 2721 WP_042649031.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32052.32 Da        Isoelectric Point: 7.0918

>NTDB_id=797210 PYU99_RS18755 WP_042649027.1 4089796..4090668(+) (pilD) [Aeromonas media strain K521]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=797210 PYU99_RS18755 WP_042649027.1 4089796..4090668(+) (pilD) [Aeromonas media strain K521]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTTAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGTTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACACTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATCGGGATCGGACTTATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCACTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.404

98.276

0.603
  pilD Vibrio campbellii strain DS40M4

56.055

99.655

0.559
  pilD Acinetobacter nosocomialis M2

52.518

95.862

0.503
  pilD Acinetobacter baumannii D1279779

52.158

95.862

0.5
  pilD Neisseria gonorrhoeae MS11

49.049

90.69

0.445