Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RA106_RS08255 Genome accession   NZ_CP132900
Coordinates   1604672..1605190 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   Q5M2Q4
Organism   Streptococcus thermophilus strain CICC 20372     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1599672..1610190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS08235 (RA106_08230) - 1601580..1602524 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  RA106_RS08240 (RA106_08235) - 1602595..1603266 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  RA106_RS08245 (RA106_08240) - 1603383..1604264 (+) 882 WP_011681623.1 DUF4300 family protein -
  RA106_RS08250 (RA106_08245) rpsR 1604391..1604630 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  RA106_RS08255 (RA106_08250) ssb 1604672..1605190 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  RA106_RS08260 (RA106_08255) rpsF 1605202..1605492 (-) 291 WP_011681624.1 30S ribosomal protein S6 -
  RA106_RS08265 (RA106_08260) - 1605711..1606664 (+) 954 WP_011681625.1 hypothetical protein -
  RA106_RS08270 (RA106_08265) mutY 1607204..1608355 (+) 1152 WP_011681626.1 A/G-specific adenine glycosylase -
  RA106_RS08275 (RA106_08270) - 1608682..1608933 (-) 252 WP_011226551.1 hypothetical protein -
  RA106_RS08280 (RA106_08275) - 1609036..1609263 (-) 228 WP_011681629.1 hypothetical protein -
  RA106_RS08285 (RA106_08280) - 1609250..1609564 (-) 315 WP_014608696.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=797106 RA106_RS08255 WP_002951905.1 1604672..1605190(-) (ssb) [Streptococcus thermophilus strain CICC 20372]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=797106 RA106_RS08255 WP_002951905.1 1604672..1605190(-) (ssb) [Streptococcus thermophilus strain CICC 20372]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366