Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RA106_RS02250 Genome accession   NZ_CP132900
Coordinates   416325..417284 (+) Length   319 a.a.
NCBI ID   WP_024704211.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CICC 20372     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 411325..422284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS02240 (RA106_02250) metG 411850..413853 (+) 2004 WP_011226921.1 methionine--tRNA ligase -
  RA106_RS02245 (RA106_02255) - 414131..415027 (-) 897 WP_014608039.1 LysR family transcriptional regulator -
  RA106_RS02250 (RA106_02260) coiA 416325..417284 (+) 960 WP_024704211.1 competence protein CoiA Machinery gene
  RA106_RS02255 (RA106_02265) pepF 417295..419100 (+) 1806 WP_024704212.1 oligoendopeptidase F Regulator
  RA106_RS02260 (RA106_02270) - 419282..419989 (+) 708 WP_024704213.1 O-methyltransferase -
  RA106_RS02265 (RA106_02275) - 420051..421193 (+) 1143 WP_024704214.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38050.03 Da        Isoelectric Point: 9.0256

>NTDB_id=797049 RA106_RS02250 WP_024704211.1 416325..417284(+) (coiA) [Streptococcus thermophilus strain CICC 20372]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKQGFVQIRLSIDGFEKLFMQYYRKMDFSYKQTLCPPIFYAKIVEYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=797049 RA106_RS02250 WP_024704211.1 416325..417284(+) (coiA) [Streptococcus thermophilus strain CICC 20372]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTTTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCAGAGTCTAAGCAAGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTTATGCAGTATTATC
GAAAAATGGATTTTTCTTATAAGCAAACCCTGTGCCCTCCCATCTTTTATGCTAAAATAGTAGAGTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439