Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   PYW39_RS04470 Genome accession   NZ_CP118973
Coordinates   912219..912848 (+) Length   209 a.a.
NCBI ID   WP_002466112.1    Uniprot ID   -
Organism   Staphylococcus warneri strain DSM 20316     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 907219..917848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW39_RS04440 - 907242..907967 (+) 726 WP_002466154.1 type 1 glutamine amidotransferase -
  PYW39_RS04445 - 908035..909021 (-) 987 WP_015364857.1 FUSC family protein -
  PYW39_RS04450 map 909188..909943 (+) 756 WP_002466104.1 type I methionyl aminopeptidase -
  PYW39_RS04455 - 910087..910473 (+) 387 WP_002466133.1 DUF2543 family protein -
  PYW39_RS04460 liaF 910488..911189 (+) 702 WP_103286363.1 cell wall-active antibiotics response protein LiaF -
  PYW39_RS04465 vraS 911186..912229 (+) 1044 WP_002466111.1 sensor histidine kinase Regulator
  PYW39_RS04470 vraR 912219..912848 (+) 630 WP_002466112.1 two-component system response regulator VraR Regulator
  PYW39_RS04475 - 912907..914142 (-) 1236 WP_015364859.1 YihY/virulence factor BrkB family protein -
  PYW39_RS04480 - 914372..914656 (-) 285 WP_103286364.1 YtxH domain-containing protein -
  PYW39_RS04485 - 914663..915127 (-) 465 WP_002466141.1 low molecular weight protein-tyrosine-phosphatase -
  PYW39_RS04490 - 915274..915477 (+) 204 WP_002466135.1 DUF1128 domain-containing protein -
  PYW39_RS04495 - 915490..916731 (+) 1242 WP_015364860.1 aminopeptidase -
  PYW39_RS04500 - 916790..917320 (+) 531 WP_002452295.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23562.15 Da        Isoelectric Point: 4.7945

>NTDB_id=797003 PYW39_RS04470 WP_002466112.1 912219..912848(+) (vraR) [Staphylococcus warneri strain DSM 20316]
MAIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGESGKDAIAKAHELQPDLILMDLLMDDMDGVEATTEIKKDLPHIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTYNGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=797003 PYW39_RS04470 WP_002466112.1 912219..912848(+) (vraR) [Staphylococcus warneri strain DSM 20316]
ATGGCGATTAAAGTATTATTTGTAGACGACCATGAGATGGTTAGAATAGGTATATCAAGTTACTTATCAACACAATCTGA
CATTGAAGTAGTGGGAGAAGGAGAGTCTGGGAAAGATGCAATTGCAAAGGCACACGAGTTACAACCAGATTTAATTCTAA
TGGACTTACTGATGGATGATATGGATGGTGTAGAAGCGACAACAGAAATAAAAAAGGATTTACCTCACATCAAAGTAGTA
ATGCTTACAAGTTTCATTGAAGATAAAGAAGTATATCGAGCTTTAGATGCTGGTGTAGATAGTTATATTTTAAAGACTAC
AAGTGCTAGTGATATCGCAGAAGCGGTTCGTAAAACATACAATGGTGAATCGGTGTTTGAACCAGAAGTATTAGTTAAAA
TGCGTAACAGAATGAAAAAACGCGCTGAGCTATATGAAATGTTAACAGAAAGAGAAATGGAAATTTTATTGTTAATTGCT
AAAGGTTACTCCAATCAAGAGATTGCTAGTGCATCTCACATTACAATAAAAACAGTTAAAACACATGTAAGTAATATTCT
AAGTAAATTAGAAGTTCAAGATAGAACACAAGCAGTCATTTATGCTTTCCAACATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.258

100

0.943
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368