Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PYW33_RS01595 Genome accession   NZ_CP118963
Coordinates   371233..371760 (+) Length   175 a.a.
NCBI ID   WP_004644951.1    Uniprot ID   N8Q3H6
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366233..376760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS01580 pilM 368818..369876 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  PYW33_RS01585 comN 369876..370514 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  PYW33_RS01590 comO 370511..371233 (+) 723 WP_004644950.1 type 4a pilus biogenesis protein PilO Machinery gene
  PYW33_RS01595 pilP 371233..371760 (+) 528 WP_004644951.1 pilus assembly protein PilP Machinery gene
  PYW33_RS01600 pilQ 371779..373932 (+) 2154 WP_004644953.1 type IV pilus secretin PilQ family protein Machinery gene
  PYW33_RS01605 aroK 373969..374505 (+) 537 WP_004644955.1 shikimate kinase AroK -
  PYW33_RS01610 aroB 374534..375613 (+) 1080 WP_004644956.1 3-dehydroquinate synthase -
  PYW33_RS01615 - 375624..376502 (+) 879 WP_016806916.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19315.49 Da        Isoelectric Point: 8.0127

>NTDB_id=796911 PYW33_RS01595 WP_004644951.1 371233..371760(+) (pilP) [Acinetobacter lwoffii strain DSM 2403]
MKNIKITSALTLGFLLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSMRNQAGQILALIQTPDGEVERIQRGSYMGLNHGRVIGITPTQINLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=796911 PYW33_RS01595 WP_004644951.1 371233..371760(+) (pilP) [Acinetobacter lwoffii strain DSM 2403]
ATGAAGAACATTAAAATTACTTCAGCTTTAACACTTGGGTTTTTATTGTTGGGATGCGATTCACGCATTGATGCAGTCAA
TCAGGAAATGGCTAATATTCGTAATCAGCCACCTTTGCCAATTGAACCGGCTCCTGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGCCCTTTTTTACCAAGCTCTCTGGCTGCTGAACTGAAAATTATGGCGGGGAAACGG
GTTTATCCAAACCTATCACGTCAACTGCAACCGCTAGAAAGTTATCCGCTCGAAACATTGACCATGAAAGGCAGTATGCG
CAATCAGGCAGGACAAATTCTGGCTTTAATCCAGACGCCTGATGGTGAGGTTGAGCGGATTCAGCGTGGCAGCTATATGG
GACTTAATCATGGTCGTGTAATTGGAATTACACCGACACAGATCAATCTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCGCGAAGTCTGGTTCTCATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q3H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76

100

0.76
  comL Acinetobacter baylyi ADP1

72.781

96.571

0.703