Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PYW33_RS01600 Genome accession   NZ_CP118963
Coordinates   371779..373932 (+) Length   717 a.a.
NCBI ID   WP_004644953.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366779..378932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS01580 pilM 368818..369876 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  PYW33_RS01585 comN 369876..370514 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  PYW33_RS01590 comO 370511..371233 (+) 723 WP_004644950.1 type 4a pilus biogenesis protein PilO Machinery gene
  PYW33_RS01595 pilP 371233..371760 (+) 528 WP_004644951.1 pilus assembly protein PilP Machinery gene
  PYW33_RS01600 pilQ 371779..373932 (+) 2154 WP_004644953.1 type IV pilus secretin PilQ family protein Machinery gene
  PYW33_RS01605 aroK 373969..374505 (+) 537 WP_004644955.1 shikimate kinase AroK -
  PYW33_RS01610 aroB 374534..375613 (+) 1080 WP_004644956.1 3-dehydroquinate synthase -
  PYW33_RS01615 - 375624..376502 (+) 879 WP_016806916.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 77852.13 Da        Isoelectric Point: 5.2409

>NTDB_id=796912 PYW33_RS01600 WP_004644953.1 371779..373932(+) (pilQ) [Acinetobacter lwoffii strain DSM 2403]
MNKSIKEFIFGDANTMNRVFRQFSMGAVAIAVMQAASAQVAVTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSNIPVATREASSVEVTSDAQRARLTVNLTDAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGIS
NIGFQRGTQGEGQVVIDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVAYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSG
SSSNTTNNDERESLLSSRGSVSIDARTNTVIVNDTQLFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGLL
SQGVTDNNHLLVGGSDTTLWDLKTPDDDGKYTIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADGYGEV
ISTPKVLTADKQKATVASGSQIPYQSAEGGGTNAVSTTAFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLT
INKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKADNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=796912 PYW33_RS01600 WP_004644953.1 371779..373932(+) (pilQ) [Acinetobacter lwoffii strain DSM 2403]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCGTGTGTTTCGTCAGTTTTCAATGGGTGC
TGTTGCAATTGCGGTGATGCAAGCAGCCAGCGCACAAGTGGCCGTAACGAATGTGGTACCTATGCAGCTTCCTGGTCAAG
GAACTGAAATTCGGGTGATGTTTAATGGTTTACCACCTCAACCACAAGCCTATCAATTAGAATCACCGTCACGTTTGATT
CTGGACTTTGACAAGGCCCAACAGAATTTAAAACAAAGCAACATTCCGGTCGCAACGCGTGAAGCCAGTTCAGTGGAGGT
CACTTCGGATGCACAGCGTGCCCGTTTGACGGTTAATCTGACAGATGCAGGTGCCTTTACCACTCGAGTAGAAGGCAATA
CTTTTATTCTTAAAATTAACTCTGCAACTCCTGTAGCCATAGCTCAACCTGTGCAGCAACAGTCAGCTCAGGGTATTAGC
AATATTGGTTTCCAGCGCGGTACGCAAGGTGAAGGCCAGGTCGTTATTGATCTATTAGGAAATAATACTCCTGTTGATGT
ACAGCAGCAGGGTACCAAGGTTATTGTGCGCACTTTAGGTTCCAAGATTCCGGCTCATTTGACCCGCCGTCTTAATGTGA
CAGATTTCGCGACTCCGGTATCAAGTGTAGATGCTGTGAATCAAAATGGTTCAGGAGTCATTACGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTACCAAACAGATAATAAGCTGACCATCAGCTTGAAACGTCCGGAAGCCAAGAGTCCATTGCG
TCCTAAAACTGTCGCTTATAGCGGTAAGAAAATTTCGCTAGATTTCCAAGATATTGAAGTGCGCCGCGTGTTGCAGTTAT
TGGCAGATTTTACCGATATCAATATGGTGGCTGCAGATAGTGTGCAAGGTAATATTACCTTGCGCTTGAAAGAGGTACCT
TGGGATCAGGCGCTGGATATTGTGCTGAAAACCAAAAACCTGGATAAACGCCGTAATGGCAATGTGATCTGGATCGCACC
AGTTGCAGAGCTGATAAAGGCTGAAGAGGAAGAAGCTAAGGCGATTAAGCAGAGTGTTGCACTTGCGCCTATCCAAACGG
AATATATGCAGCTCAGTTATGCCAAAGCCGCTGATATTGAGAAACTGATTACGCAGAATAAAGGCGCATCTAGTTCAGGT
AGTTCGAGTAACACTACAAATAATGATGAGAGAGAAAGCTTATTGAGTTCACGTGGCTCTGTGTCTATTGATGCACGAAC
CAATACCGTTATTGTGAATGATACTCAGCTCTTTATCGATAAAATCCGTAATATGGTGGATCTGCTCGATGTGCAGGTCA
AGCAGGTGATGGTCGAAGCACGTATTGTGCGAGCTACCACTGACTTCACCAAAGAGATGGGGGTAAAATGGGGGCTTCTG
TCTCAAGGTGTAACTGATAATAATCATCTATTGGTCGGTGGTAGTGATACTACATTATGGGATTTAAAAACACCTGATGA
TGATGGTAAGTATACGATTCAACGGCCGGATAATCTTAATGTGGACTTGGGTGTTACCAGCCAAGGAGCAAGCCGTATTG
CCTTTGGTTTGATCAGCCTCTCTGATTTTATGCTGGATCTGGAGCTTTCTGCACTTCAGGCAGACGGTTATGGTGAAGTG
ATTTCTACCCCTAAAGTACTGACTGCGGATAAGCAAAAAGCGACTGTGGCTTCGGGCTCACAAATTCCGTATCAATCTGC
TGAAGGCGGGGGTACTAATGCCGTGTCGACTACAGCATTTATTGATGCGACTTTAAGTCTGGATGTCACGCCAAGCATTA
CCCCAGATGGTAAAGTACAGATGGAACTCAATATTACCAGTGACTCACCAGGGAACCCGACACCGACCGGACAGCTCACT
ATTAACAAAAACCAGATCAATACCAATGTCCTGGTTGATAATGGTGAAACAGTGGTTCTAGGTGGTATTTTTGAGCAAGA
AACCCGTAATGCGCAAACCAAGGTGCCATTTCTGGGTGATATTCCTTACGTAGGTCGTTTATTCCGTAAAGATTTAAAGG
CGGATAACAAACGTGAGTTGCTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

AMIN domain (AMIN)

(55-134)

Bacterial type II and III secretion system protein (Secretin)

(551-709)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.466

100

0.738
  pilQ Acinetobacter baumannii strain A118

72.329

100

0.736
  comQ Acinetobacter baylyi ADP1

70.646

99.303

0.702
  pilQ Pseudomonas aeruginosa PAK

41.488

97.49

0.404
  pilQ Legionella pneumophila strain Lp02

37.518

96.653

0.363
  pilQ Legionella pneumophila strain ERS1305867

37.482

96.374

0.361