Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QU709_RS33145 Genome accession   NZ_CP132593
Coordinates   7421429..7423561 (+) Length   710 a.a.
NCBI ID   WP_306502275.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7416429..7428561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS33120 (QU709_33135) - 7416724..7417152 (+) 429 WP_306502270.1 VOC family protein -
  QU709_RS33125 (QU709_33140) fdhA 7417201..7418427 (-) 1227 WP_306502271.1 formaldehyde dehydrogenase, glutathione-independent -
  QU709_RS33130 (QU709_33145) - 7418665..7419219 (-) 555 WP_306502272.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QU709_RS33135 (QU709_33150) - 7419314..7420189 (-) 876 WP_306502273.1 glycerophosphodiester phosphodiesterase -
  QU709_RS33140 (QU709_33155) - 7420469..7421338 (+) 870 WP_306502274.1 MHYT domain-containing protein -
  QU709_RS33145 (QU709_33160) uvrB 7421429..7423561 (+) 2133 WP_306502275.1 excinuclease ABC subunit UvrB Machinery gene
  QU709_RS33150 (QU709_33165) - 7423733..7424311 (+) 579 WP_232025198.1 TerD family protein -
  QU709_RS33155 (QU709_33170) - 7424357..7426375 (+) 2019 WP_306502276.1 TerD family protein -
  QU709_RS33160 (QU709_33175) - 7426637..7427638 (+) 1002 WP_306502277.1 TerC family protein -
  QU709_RS33165 (QU709_33180) - 7427766..7428080 (+) 315 WP_306502278.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 79721.53 Da        Isoelectric Point: 4.8910

>NTDB_id=796832 QU709_RS33145 WP_306502275.1 7421429..7423561(+) (uvrB) [Streptomyces sp. YU58 strain SX92]
MRPVSKIERTVAPFEVVSSYQPSGDQPAAIAELAKRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDEHLYVFPASHYVAGPERMERAVNDIEKELTERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYL
SATPGKYELSRGDGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQIAYNTERGLDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKSKDGKGAKAPVPALGG
KAAKGGKAAKGKESVPTDRPAAELAGQIEEMTQRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=796832 QU709_RS33145 WP_306502275.1 7421429..7423561(+) (uvrB) [Streptomyces sp. YU58 strain SX92]
ATGCGGCCAGTTTCCAAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCTCCTACCAGCCCAGCGGTGACCAGCC
GGCGGCCATCGCCGAGCTGGCCAAGCGCGTCGAGGCAGGTGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACGGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGTGAACTCCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGTGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGTACGCCC
CAGGAGTACGTGGACCGCATGGTCCCCCTCAAGGTCGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACCTGGCCTTCACCCGTGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGACGAACACCTGTACGTCTTCCCGGCCTCCCACTACGTCGCCGGCCCCGAGCGCATGGAGCGGGC
CGTCAACGACATCGAGAAGGAACTGACGGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGAGGATGCGCACCACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCTCGCCGCCGAACACCCTGCTGGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTGACCGTGCCCCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGTCTCCCCTCCGCGCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCACCGAGCGCATCGGTCAGACCGTCTATCTG
TCGGCGACCCCCGGCAAGTACGAGCTCTCCCGCGGGGACGGCGTGGTCGAGCAGATCATCCGCCCGACCGGCCTGGTCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGGGTCGAGCTGCTGCGCGAGCTGCGCTCCGGCGAGTTCGACGTGCT
GGTCGGCATCAACCTCCTGCGCGAGGGACTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GGTTCCTGCGCTCGGGCACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGATCGCCTACAACAC
GGAGCGGGGCCTCGACCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTGGCGCAGATCGCCCGGGAGGACGTCGATA
CGGAGCAGCTGCTGGGCTCCGGCTACCGCAAGTCCAAGGACGGCAAGGGAGCCAAGGCCCCGGTGCCCGCCCTCGGTGGC
AAGGCGGCCAAGGGCGGCAAGGCGGCGAAGGGCAAGGAGAGCGTCCCCACGGACCGTCCCGCCGCCGAACTCGCCGGACA
GATCGAGGAGATGACGCAACGCATGCGTGCGGCCGCCGCCGACCTCCAGTTCGAGATCGCGGCCCGACTGCGCGACGAGG
TCTCCGAGATGAAGAAGGAACTGCGTCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(667-699)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(24-134)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.726

96.62

0.558
  uvrB Streptococcus pneumoniae R6

57.726

96.62

0.558
  uvrB Streptococcus pneumoniae D39

57.726

96.62

0.558