Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYW36_RS11000 Genome accession   NZ_CP118953
Coordinates   2247647..2248150 (-) Length   167 a.a.
NCBI ID   WP_103158639.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain DSM 20454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2242647..2253150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW36_RS10970 - 2243096..2244316 (-) 1221 WP_103158643.1 glycerate kinase -
  PYW36_RS10975 chrA 2244436..2245593 (-) 1158 WP_103158642.1 chromate efflux transporter -
  PYW36_RS10980 - 2245604..2245906 (-) 303 WP_037575417.1 PadR family transcriptional regulator -
  PYW36_RS10985 - 2246068..2246448 (+) 381 WP_103158641.1 DUF1801 domain-containing protein -
  PYW36_RS10990 - 2246539..2247213 (-) 675 WP_103158640.1 type II CAAX endopeptidase family protein -
  PYW36_RS10995 rpsR 2247361..2247603 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  PYW36_RS11000 ssbA 2247647..2248150 (-) 504 WP_103158639.1 single-stranded DNA-binding protein Machinery gene
  PYW36_RS11005 rpsF 2248174..2248470 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  PYW36_RS11010 - 2248784..2249419 (+) 636 WP_103158638.1 NAD(P)H-binding protein -
  PYW36_RS11015 ychF 2249624..2250721 (-) 1098 WP_037575402.1 redox-regulated ATPase YchF -
  PYW36_RS11020 - 2250728..2250934 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  PYW36_RS11025 - 2250970..2251860 (-) 891 WP_037575395.1 mechanosensitive ion channel family protein -
  PYW36_RS11030 - 2251884..2252711 (-) 828 WP_037575392.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18586.13 Da        Isoelectric Point: 4.9056

>NTDB_id=796735 PYW36_RS11000 WP_103158639.1 2247647..2248150(-) (ssbA) [Staphylococcus chromogenes strain DSM 20454]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYSQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=796735 PYW36_RS11000 WP_103158639.1 2247647..2248150(-) (ssbA) [Staphylococcus chromogenes strain DSM 20454]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACTTTCACATTAGCTGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTGGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATAGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383