Detailed information NTG0796603

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PY771_RS23820
• Genome accession: NZ_CP118942
• Coordinates: 5106338..5107210 (-)
• Length: 290 a.a.
• NCBI ID: WP_077095240.1
• Uniprot ID: A0AAX3P7A8
• Organism: Aeromonas hydrophila strain K533
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5101338..5112210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY771_RS23795 (PY771_23795)	-	5103074..5104258 (+)	1185	WP_077095243.1	tetratricopeptide repeat protein	-
PY771_RS23800 (PY771_23800)	mutT	5104267..5104680 (+)	414	WP_179101298.1	8-oxo-dGTP diphosphatase MutT	-
PY771_RS23805 (PY771_23805)	yacG	5104741..5104935 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
PY771_RS23810 (PY771_23810)	zapD	5104945..5105667 (-)	723	WP_024945431.1	cell division protein ZapD	-
PY771_RS23815 (PY771_23815)	coaE	5105705..5106319 (-)	615	WP_077095241.1	dephospho-CoA kinase	-
PY771_RS23820 (PY771_23820)	pilD	5106338..5107210 (-)	873	WP_077095240.1	A24 family peptidase	Machinery gene
PY771_RS23825 (PY771_23825)	pilC	5107233..5108474 (-)	1242	WP_043126919.1	type II secretion system F family protein	Machinery gene
PY771_RS23830 (PY771_23830)	pilB	5108590..5110296 (-)	1707	WP_275115647.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PY771_RS23835 (PY771_23835)	-	5110300..5110740 (-)	441	WP_077095239.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PY771_RS23840 (PY771_23840)	nadC	5111063..5111920 (-)	858	WP_077095238.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32438.68 Da
• Isoelectric Point: 6.7410

>NTDB_id=796603 PY771_RS23820 WP_077095240.1 5106338..5107210(-) (pilD) [Aeromonas hydrophila strain K533]
MLLITDVFHSLPWLYFSLVFLFSLVIGSFLNVVIHRLPIMLEREWQAEYLGYFNPEAQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTSLLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=796603 PY771_RS23820 WP_077095240.1 5106338..5107210(-) (pilD) [Aeromonas hydrophila strain K533]
ATGTTGCTGATCACTGACGTTTTCCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCCCTGGTGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAGGCACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACATCCCTGCTCTCGCTGGTCGTCGCCGCGACATTTGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAATCTGACAGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTATTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATAGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGTATTGGTCTCATCCTGCTGCGCAATCATCATCAGAACAAACCCATCCCCTTTGGCCCCTATCT
GGCCATCGCCGGCTGGATTGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459