NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PY772_RS20910	Genome accession	NZ_CP118939
Coordinates	4448954..4449829 (+)	Length	291 a.a.
NCBI ID	WP_223917250.1	Uniprot ID	A0AAV4YQV1
Organism	Aeromonas caviae strain K524
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4443954..4454829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY772_RS20890 (PY772_20890)	-	4444415..4445365 (+)	951	WP_103261601.1	IS1595-like element ISAeca5 family transposase	-
PY772_RS20895 (PY772_20895)	-	4445381..4445797 (+)	417	WP_223917246.1	pilin	-
PY772_RS20900 (PY772_20900)	pilB	4445801..4447507 (+)	1707	WP_223917248.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PY772_RS20905 (PY772_20905)	pilC	4447635..4448876 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
PY772_RS20910 (PY772_20910)	pilD	4448954..4449829 (+)	876	WP_223917250.1	A24 family peptidase	Machinery gene
PY772_RS20915 (PY772_20915)	coaE	4449848..4450462 (+)	615	WP_201964293.1	dephospho-CoA kinase	-
PY772_RS20920 (PY772_20920)	zapD	4450500..4451222 (+)	723	WP_010675825.1	cell division protein ZapD	-
PY772_RS20925 (PY772_20925)	yacG	4451233..4451427 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
PY772_RS20930 (PY772_20930)	mutT	4451485..4451889 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
PY772_RS20935 (PY772_20935)	-	4451898..4453082 (-)	1185	WP_223916569.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32083.18 Da Isoelectric Point: 6.8280

                                >NTDB_id=796575 PY772_RS20910 WP_223917250.1 4448954..4449829(+) (pilD) [Aeromonas caviae strain K524]

MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH

PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALSPGWGTLAALLLTWTLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LAGAIIGIGLILLRNHHQSKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=796575 PY772_RS20910 WP_223917250.1 4448954..4449829(+) (pilD) [Aeromonas caviae strain K524]

ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG

CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG

GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC

CCCATAGGGGCGCTGGAGAACATTCCCCTACTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT

TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTTCCCCCGGCTGGG

GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT

CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT

CGGCGCCATGGCGGGTTACCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGT

ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG

CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGAGCAAACCCATTCCCTTTGGCCCCTA

TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	55.556	98.969	0.55
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46

Detailed information NTG0796575