Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   PX335_RS17325 Genome accession   NZ_CP118933
Coordinates   3602900..3603382 (-) Length   160 a.a.
NCBI ID   WP_017387038.1    Uniprot ID   -
Organism   Acinetobacter pittii strain ML4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597900..3608382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS17290 (PX335_17285) - 3597985..3599016 (+) 1032 WP_016802752.1 lipase secretion chaperone -
  PX335_RS17295 (PX335_17290) lip 3599132..3600073 (+) 942 WP_080591800.1 triacylglycerol lipase -
  PX335_RS17300 (PX335_17295) rplS 3600125..3600493 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  PX335_RS17305 (PX335_17300) trmD 3600713..3601468 (-) 756 WP_017387036.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PX335_RS17310 (PX335_17305) rimM 3601511..3602059 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  PX335_RS17315 (PX335_17310) rpsP 3602079..3602330 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  PX335_RS17320 (PX335_17315) pilE 3602478..3602903 (-) 426 WP_017387037.1 type IV pilin protein Machinery gene
  PX335_RS17325 (PX335_17320) pilY2 3602900..3603382 (-) 483 WP_017387038.1 type IV pilin protein Machinery gene
  PX335_RS17330 (PX335_17325) pilY1 3603393..3607247 (-) 3855 WP_017387039.1 PilC/PilY family type IV pilus protein Machinery gene
  PX335_RS17335 (PX335_17330) pilX 3607259..3608068 (-) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17535.81 Da        Isoelectric Point: 8.4721

>NTDB_id=796516 PX335_RS17325 WP_017387038.1 3602900..3603382(-) (pilY2) [Acinetobacter pittii strain ML4]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=796516 PX335_RS17325 WP_017387038.1 3602900..3603382(-) (pilY2) [Acinetobacter pittii strain ML4]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444