Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PX335_RS17320 Genome accession   NZ_CP118933
Coordinates   3602478..3602903 (-) Length   141 a.a.
NCBI ID   WP_017387037.1    Uniprot ID   A0A009HLI2
Organism   Acinetobacter pittii strain ML4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597478..3607903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS17290 (PX335_17285) - 3597985..3599016 (+) 1032 WP_016802752.1 lipase secretion chaperone -
  PX335_RS17295 (PX335_17290) lip 3599132..3600073 (+) 942 WP_080591800.1 triacylglycerol lipase -
  PX335_RS17300 (PX335_17295) rplS 3600125..3600493 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  PX335_RS17305 (PX335_17300) trmD 3600713..3601468 (-) 756 WP_017387036.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PX335_RS17310 (PX335_17305) rimM 3601511..3602059 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  PX335_RS17315 (PX335_17310) rpsP 3602079..3602330 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  PX335_RS17320 (PX335_17315) pilE 3602478..3602903 (-) 426 WP_017387037.1 type IV pilin protein Machinery gene
  PX335_RS17325 (PX335_17320) pilY2 3602900..3603382 (-) 483 WP_017387038.1 type IV pilin protein Machinery gene
  PX335_RS17330 (PX335_17325) pilY1 3603393..3607247 (-) 3855 WP_017387039.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15215.35 Da        Isoelectric Point: 7.1292

>NTDB_id=796515 PX335_RS17320 WP_017387037.1 3602478..3602903(-) (pilE) [Acinetobacter pittii strain ML4]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATITSIYGSNVSPQQG
QALYNLAFSSITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=796515 PX335_RS17320 WP_017387037.1 3602478..3602903(-) (pilE) [Acinetobacter pittii strain ML4]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
GTATTTGCAGTATTTACGCAAAGGGCATCGTACAGCTGTTCAGTCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACGATTACTTCGATTTATGGTTCTAATGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTTCTAGCATAACTGATTCAAGCTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTCTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HLI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

86.525

100

0.865
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511