Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PX335_RS06135 Genome accession   NZ_CP118933
Coordinates   1284695..1285402 (-) Length   235 a.a.
NCBI ID   WP_005070320.1    Uniprot ID   A0A009I7W0
Organism   Acinetobacter pittii strain ML4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279695..1290402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS06115 (PX335_06115) purA 1280777..1282096 (+) 1320 WP_002121613.1 adenylosuccinate synthase -
  PX335_RS06120 (PX335_06120) - 1282219..1282536 (+) 318 WP_002121533.1 hypothetical protein -
  PX335_RS06125 (PX335_06125) - 1282652..1283431 (+) 780 WP_002121572.1 M48 family metallopeptidase -
  PX335_RS06130 (PX335_06130) tas 1283486..1284535 (-) 1050 WP_017386371.1 NADP(H)-dependent aldo-keto reductase -
  PX335_RS06135 (PX335_06135) crp 1284695..1285402 (-) 708 WP_005070320.1 cAMP-activated global transcriptional regulator CRP Regulator
  PX335_RS06140 (PX335_06140) - 1285643..1285762 (+) 120 WP_002121587.1 hypothetical protein -
  PX335_RS06145 (PX335_06145) - 1285841..1286263 (+) 423 WP_017386370.1 OsmC family protein -
  PX335_RS06150 (PX335_06150) phnO 1286361..1286786 (+) 426 WP_017386369.1 GNAT family N-acetyltransferase -
  PX335_RS06155 (PX335_06155) - 1286783..1287592 (-) 810 WP_017386368.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26526.09 Da        Isoelectric Point: 4.6573

>NTDB_id=796502 PX335_RS06135 WP_005070320.1 1284695..1285402(-) (crp) [Acinetobacter pittii strain ML4]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=796502 PX335_RS06135 WP_005070320.1 1284695..1285402(-) (crp) [Acinetobacter pittii strain ML4]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGTCGTATTGCACGTTGCTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCACGTGAGATGGTTGGTCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGATGACTACGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I7W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.447

100

0.974
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404