Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PX335_RS03125 Genome accession   NZ_CP118933
Coordinates   655409..655813 (+) Length   134 a.a.
NCBI ID   WP_017387615.1    Uniprot ID   A0A429KDB1
Organism   Acinetobacter pittii strain ML4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 650409..660813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS03110 (PX335_03110) relA 651395..653701 (+) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  PX335_RS03115 (PX335_03115) - 653748..654521 (-) 774 WP_017387613.1 SDR family oxidoreductase -
  PX335_RS03120 (PX335_03120) mazG 654634..655440 (+) 807 WP_017387614.1 nucleoside triphosphate pyrophosphohydrolase -
  PX335_RS03125 (PX335_03125) comEA 655409..655813 (+) 405 WP_017387615.1 ComEA family DNA-binding protein Machinery gene
  PX335_RS03130 (PX335_03130) pcnB 655939..657402 (+) 1464 WP_017387616.1 polynucleotide adenylyltransferase PcnB -
  PX335_RS03135 (PX335_03135) folK 657399..657881 (+) 483 WP_017387617.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  PX335_RS03140 (PX335_03140) panB 657927..658736 (+) 810 WP_017387618.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  PX335_RS03145 (PX335_03145) panC 658740..659588 (+) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  PX335_RS03150 (PX335_03150) rapZ 659612..660463 (+) 852 WP_005066272.1 RNase adapter RapZ -
  PX335_RS03155 (PX335_03155) - 660460..660729 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15376.64 Da        Isoelectric Point: 10.4871

>NTDB_id=796498 PX335_RS03125 WP_017387615.1 655409..655813(+) (comEA) [Acinetobacter pittii strain ML4]
MQLSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSSVTKSSGMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=796498 PX335_RS03125 WP_017387615.1 655409..655813(+) (comEA) [Acinetobacter pittii strain ML4]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTAAGCATGC
AACATTCCTCTCATTCTAGTGTTACAAAAAGCTCAGGCATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAACTTCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429KDB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.883

100

0.694
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396