NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PX335_RS01700	Genome accession	NZ_CP118933
Coordinates	348491..349351 (-)	Length	286 a.a.
NCBI ID	WP_017385370.1	Uniprot ID	A0A009QN24
Organism	Acinetobacter pittii strain ML4
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 343491..354351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PX335_RS01675 (PX335_01675)	-	344381..345691 (+)	1311	WP_017385367.1	hypothetical protein	-
PX335_RS01680 (PX335_01680)	-	345768..346094 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
PX335_RS01685 (PX335_01685)	rlmB	346197..346946 (+)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PX335_RS01690 (PX335_01690)	-	346982..347896 (+)	915	WP_017385368.1	DMT family transporter	-
PX335_RS01695 (PX335_01695)	coaE	347893..348489 (-)	597	WP_017385369.1	dephospho-CoA kinase	-
PX335_RS01700 (PX335_01700)	pilD	348491..349351 (-)	861	WP_017385370.1	A24 family peptidase	Machinery gene
PX335_RS01705 (PX335_01705)	pilC	349351..350577 (-)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
PX335_RS01710 (PX335_01710)	pilB	350604..352316 (-)	1713	WP_017385371.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PX335_RS01715 (PX335_01715)	tpiA	352608..353402 (+)	795	WP_017385372.1	triose-phosphate isomerase	-
PX335_RS01720 (PX335_01720)	secG	353415..353744 (+)	330	WP_016142373.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32115.63 Da Isoelectric Point: 7.1044

                                >NTDB_id=796490 PX335_RS01700 WP_017385370.1 348491..349351(-) (pilD) [Acinetobacter pittii strain ML4]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=796490 PX335_RS01700 WP_017385370.1 348491..349351(-) (pilD) [Acinetobacter pittii strain ML4]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCCGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTTGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG

GCGACTTTAAACTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A009QN24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	97.203	100	0.972
pilD	Acinetobacter nosocomialis M2	96.853	100	0.969
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	53.676	95.105	0.51
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0796490