Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   O6P42_RS12360 Genome accession   NZ_CP118930
Coordinates   2514057..2516342 (-) Length   761 a.a.
NCBI ID   WP_275115029.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2509057..2521342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS12340 (O6P42_12340) - 2509797..2509976 (-) 180 WP_005378451.1 Trm112 family protein -
  O6P42_RS12345 (O6P42_12345) lpxK 2509957..2510964 (-) 1008 WP_275115028.1 tetraacyldisaccharide 4'-kinase -
  O6P42_RS12350 (O6P42_12350) msbA 2510970..2512718 (-) 1749 WP_033905044.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  O6P42_RS12355 (O6P42_12355) - 2513064..2514053 (+) 990 WP_033905043.1 glycosyltransferase -
  O6P42_RS12360 (O6P42_12360) comEC 2514057..2516342 (-) 2286 WP_275115029.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O6P42_RS12365 (O6P42_12365) - 2516351..2516860 (+) 510 WP_275115030.1 DUF2062 domain-containing protein -
  O6P42_RS12370 (O6P42_12370) lolE 2517009..2518253 (-) 1245 WP_033905042.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  O6P42_RS12375 (O6P42_12375) lolD 2518256..2518963 (-) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  O6P42_RS12380 (O6P42_12380) lolC 2518956..2520164 (-) 1209 WP_017820015.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  O6P42_RS12385 (O6P42_12385) - 2520414..2520983 (+) 570 WP_017634743.1 hypothetical protein -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 85529.64 Da        Isoelectric Point: 8.5345

>NTDB_id=796439 O6P42_RS12360 WP_275115029.1 2514057..2516342(-) (comEC) [Vibrio alginolyticus strain V208]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAVGSWQPISMEMTMLVMVIVVCLIFQRFMSHYAWYLLL
GIVISIKFAAEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVFWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGVTWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRSGTNIKRPNVELGL

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=796439 O6P42_RS12360 WP_275115029.1 2514057..2516342(-) (comEC) [Vibrio alginolyticus strain V208]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCTATAGAAGC
GGTAAATTCTCAAACTTTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGATGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCGTACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAGTAGGTTCTTGGCAACCCATTAGCATGGAAA
TGACAATGCTGGTTATGGTGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCATTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGTTTGCAGCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGTTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATTGAGGCGGTGAGCCCGAGTGTGGCAGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGCTTGGCGTTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAGCGGAACTAATATAAAAAGACCTAATGTCGAATTAGGTCTGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.426

98.423

0.683
  comEC Vibrio campbellii strain DS40M4

65.642

98.292

0.645
  comEC Vibrio cholerae strain A1552

43.236

99.08

0.428