Detailed information NTG0796427

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: O6P42_RS02840
• Genome accession: NZ_CP118930
• Coordinates: 583228..584097 (-)
• Length: 289 a.a.
• NCBI ID: WP_025768182.1
• Uniprot ID: A0AA36UQF6
• Organism: Vibrio alginolyticus strain V208
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 578228..589097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O6P42_RS02800 (O6P42_02800)	rimM	578421..578969 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
O6P42_RS02805 (O6P42_02805)	trmD	578997..579758 (+)	762	WP_115386283.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
O6P42_RS02810 (O6P42_02810)	rplS	579800..580153 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
O6P42_RS02815 (O6P42_02815)	-	580485..580961 (+)	477	WP_147289574.1	hypothetical protein	-
O6P42_RS02820 (O6P42_02820)	-	580998..581219 (+)	222	WP_054579073.1	hypothetical protein	-
O6P42_RS02825 (O6P42_02825)	yacG	581492..581686 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
O6P42_RS02830 (O6P42_02830)	zapD	581845..582585 (-)	741	WP_005373086.1	cell division protein ZapD	-
O6P42_RS02835 (O6P42_02835)	coaE	582613..583227 (-)	615	WP_017635920.1	dephospho-CoA kinase	-
O6P42_RS02840 (O6P42_02840)	pilD	583228..584097 (-)	870	WP_025768182.1	A24 family peptidase	Machinery gene
O6P42_RS02845 (O6P42_02845)	pilC	584162..585385 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
O6P42_RS02850 (O6P42_02850)	pilB	585409..587094 (-)	1686	WP_115386281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O6P42_RS02855 (O6P42_02855)	-	587094..587528 (-)	435	WP_029803401.1	pilin	-
O6P42_RS02860 (O6P42_02860)	nadC	587792..588679 (-)	888	WP_115386280.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32597.78 Da
• Isoelectric Point: 7.0197

>NTDB_id=796427 O6P42_RS02840 WP_025768182.1 583228..584097(-) (pilD) [Vibrio alginolyticus strain V208]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=796427 O6P42_RS02840 WP_025768182.1 583228..584097(-) (pilD) [Vibrio alginolyticus strain V208]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46