Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   PXG99_RS12685 Genome accession   NZ_CP118911
Coordinates   2524920..2526068 (-) Length   382 a.a.
NCBI ID   WP_007410270.1    Uniprot ID   -
Organism   Bacillus velezensis strain XRD006     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519920..2531068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS12655 (PXG99_12655) - 2520059..2520817 (-) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  PXG99_RS12660 (PXG99_12660) - 2520811..2521758 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  PXG99_RS12665 (PXG99_12665) ceuB 2521748..2522701 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  PXG99_RS12670 (PXG99_12670) - 2523115..2524479 (+) 1365 WP_015239155.1 aspartate kinase -
  PXG99_RS12675 (PXG99_12675) - 2524574..2524669 (+) 96 WP_021495118.1 YjcZ family sporulation protein -
  PXG99_RS12680 (PXG99_12680) phrC 2524817..2524936 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PXG99_RS12685 (PXG99_12685) rapC 2524920..2526068 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  PXG99_RS12690 (PXG99_12690) - 2526221..2527654 (-) 1434 WP_103042081.1 HAMP domain-containing sensor histidine kinase -
  PXG99_RS12695 (PXG99_12695) - 2527641..2528324 (-) 684 WP_014416901.1 response regulator transcription factor -
  PXG99_RS12700 (PXG99_12700) - 2528537..2529970 (+) 1434 WP_029974314.1 ABC transporter permease -
  PXG99_RS12705 (PXG99_12705) - 2529985..2530668 (+) 684 WP_014416899.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45475.70 Da        Isoelectric Point: 4.9916

>NTDB_id=796253 PXG99_RS12685 WP_007410270.1 2524920..2526068(-) (rapC) [Bacillus velezensis strain XRD006]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=796253 PXG99_RS12685 WP_007410270.1 2524920..2526068(-) (rapC) [Bacillus velezensis strain XRD006]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568